Browse Element(s) Details


OsAffx.29188.1.S1_at

Description tigr:9636.m01403
TID=OsAffx.29188.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1413010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g14070Os.39123.1.S1_at10/118+8418100..8418930complex 1 family protein, putative, expressed
LOC_Os08g14070Os.39123.2.S1_s_at4/118+8418100..8418930complex 1 family protein, putative, expressed
LOC_Os08g14080OsAffx.29187.1.S1_at11/118+8421463..8421925hypothetical protein
LOC_Os08g14090NANA8+8424759..8427052Dienelactone hydrolase family protein
LOC_Os08g14109Os.8582.1.S1_at11/118+8430980..8439573Endo-1,3;1,4-beta-D-glucanase precursor, putative, expressed
LOC_Os08g14130OsAffx.29188.1.S1_at10/118+8442291..8443326hypothetical protein
LOC_Os08g14140NANA8+8445317..8445571hypothetical protein
LOC_Os08g14150NANA8+8448698..8449196hypothetical protein
LOC_Os08g14160NANA8+8449458..8449712hypothetical protein
LOC_Os08g14170NANA8+8453627..8457433retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g14180OsAffx.29191.1.S1_at11/118+8458570..8463167Sulfotransferase domain containing protein, expressed
LOC_Os08g14190Os.51158.1.S1_at11/118+8466178..8469246Sulfotransferase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29188.1.S1_at--1022--6211Chr08:8442321..8442345 (25 bp)
GAGGCCATCATCCACTCATGGGATC
LOC_Os08g14130
OsAffx.29188.1.S1_at--321--811Chr08:8442338..8442362 (25 bp)
ATGGGATCCATTGCCTACCATCATG
LOC_Os08g14130
OsAffx.29188.1.S1_at--143--8351Chr08:8442364..8442388 (25 bp)
GGCGGCTCGTGCGTCCCAGAGACTT
LOC_Os08g14130
OsAffx.29188.1.S1_at--91--4351Chr08:8442379..8442403 (25 bp)
CCAGAGACTTGGTGGCGCTCCGGTT
LOC_Os08g14130
OsAffx.29188.1.S1_at--1032--6291Chr08:8442441..8442465 (25 bp)
GATGACGCTCGTGTATTGGCTACTA
LOC_Os08g14130
OsAffx.29188.1.S1_at--1093--831NONE
ATGGAGCTGCAATGGCGCTCCAGCA
NONE
OsAffx.29188.1.S1_at--1154--451Chr08:8443203..8443227 (25 bp)
ATCCCCGCGTCGTGACATGAACGAC
LOC_Os08g14130
OsAffx.29188.1.S1_at--608--651Chr08:8443219..8443243 (25 bp)
ATGAACGACCTCACCCGGAGGATTG
LOC_Os08g14130
OsAffx.29188.1.S1_at--177--11Chr08:8443237..8443261 (25 bp)
AGGATTGGGCCCTCGTTGGGTCACA
LOC_Os08g14130
OsAffx.29188.1.S1_at--773--10832Chr10:8583980..8583999 (20 bp)
TTGGGTCACAACGTTGTAGTGGCTG
NONE
OsAffx.29188.1.S1_at--671--6931Chr08:8443267..8443291 (25 bp)
GTAGTGGCTGAGCTCGCCGCTTACA
LOC_Os08g14130
Target Sequence 
GAGGCCATCATCCACTCATGGGATCCATTGCCTACCATCATGGGGCGGCTCGTGCGTCCCAGAGACTTGGTGGCGCTCCG
GTTGGATGTGGAGGCACCGATCTGGTCCTCCCTGCTTGGGGATGACGCTCGTGTATTGGCTACTATGATGAGATCAATGG
AGCTAATGGAGCTGCAATGGCGCTCCAGCACACCATCCCCGCGTCGTGACATGAACGACCTCACCCGGAGGATTGGGCCC
TCGTTGGGTCACAACGTTGTAGTGGCTGAGCTCGCCGCTTACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29188.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis