Browse Element(s) Details


OsAffx.29191.1.S1_at

Description tigr:9636.m01410
TID=OsAffx.29191.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Sulfotransferase domain
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1418011/11Sulfotransferase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g14109Os.8582.1.S1_at11/118+8430980..8439573Endo-1,3;1,4-beta-D-glucanase precursor, putative, expressed
LOC_Os08g14130OsAffx.29188.1.S1_at10/118+8442291..8443326hypothetical protein
LOC_Os08g14140NANA8+8445317..8445571hypothetical protein
LOC_Os08g14150NANA8+8448698..8449196hypothetical protein
LOC_Os08g14160NANA8+8449458..8449712hypothetical protein
LOC_Os08g14170NANA8+8453627..8457433retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g14180OsAffx.29191.1.S1_at11/118+8458570..8463167Sulfotransferase domain containing protein, expressed
LOC_Os08g14190Os.51158.1.S1_at11/118+8466178..8469246Sulfotransferase domain containing protein, expressed
LOC_Os08g14200Os.23174.1.S1_s_at11/118+8482027..8483559Brassinosteroid-regulated protein BRU1 precursor, putative, expressed
LOC_Os08g14200Os.23174.1.S1_at11/118+8482027..8483559Brassinosteroid-regulated protein BRU1 precursor, putative, expressed
LOC_Os08g14200OsAffx.16990.1.S1_at11/118+8482027..8483559Brassinosteroid-regulated protein BRU1 precursor, putative, expressed
LOC_Os08g14210OsAffx.5812.1.S1_at11/118+8487518..8488973Glycosyl hydrolases family 16 protein

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Gene Ontology Classification
GO idTypeName
GO:0008146molecular_functionsulfotransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29191.1.S1_at--1096--4211Chr08:8460256..8460280 (25 bp)
CCGCTAGGACGGGTTACTCGTGGAT
LOC_Os08g14180
OsAffx.29191.1.S1_at--772--2271Chr08:8462741..8462765 (25 bp)
AAATCTGTACGAGTCCTTCTGCGAG
LOC_Os08g14180
OsAffx.29191.1.S1_at--218--7571Chr08:8462780..8462804 (25 bp)
GGGCCCTGTTTGGAATCACATTCTC
LOC_Os08g14180
OsAffx.29191.1.S1_at--816--9571Chr08:8462845..8462869 (25 bp)
TCTTCCTTAGATATGAGCGGCTGCT
LOC_Os08g14180
OsAffx.29191.1.S1_at--1092--8311Chr08:8462863..8462887 (25 bp)
GGCTGCTTCAAGACCCAACAGACAG
LOC_Os08g14180
OsAffx.29191.1.S1_at--497--4971Chr08:8462887..8462911 (25 bp)
GCATCAGGGAGCTAGCCGAGTTCGT
LOC_Os08g14180
OsAffx.29191.1.S1_at--163--1691Chr08:8462917..8462941 (25 bp)
AGCCATTCACTAGCTCCGAGGAAGA
LOC_Os08g14180
OsAffx.29191.1.S1_at--1132--3951Chr08:8462956..8462980 (25 bp)
CGGAGATCGTAGAGCTCTGTAGCAT
LOC_Os08g14180
OsAffx.29191.1.S1_at--216--891Chr08:8463014..8463038 (25 bp)
AGGCGCCCAAGGTGTGTTCATCAAG
LOC_Os08g14180
OsAffx.29191.1.S1_at--98--3751Chr08:8463043..8463067 (25 bp)
CTCACGACTCGTATTTCCGGAAGGG
LOC_Os08g14180
OsAffx.29191.1.S1_at--338--2771Chr08:8463110..8463134 (25 bp)
AAGACGTCTGGATGCGATTCTCCGG
LOC_Os08g14180
Target Sequence 
CCGCTAGGACGGGTTACTCGTGGATGGCGCTGCGACGGGGCAGAAGCCACTCTTCTCCGGATCAGAAGGATGCATTGGTC
TCCATGTGGCACTTCCTGAAGCGCAATGGGCTACAAAATCTGTACGAGTCCTTCTGCGAGGGCACATGCTTCGGGGGCCC
TGTTTGGAATCACATTCTCGAGTACTGGAGGGCAAGCAAAGCGAACCCAAGCAGGGTGCTCTTCCTTAGATATGAGCGGC
TGCTTCAAGACCCAACAGACAGCATCAGGGAGCTAGCCGAGTTCGTCGGGCAGCCATTCACTAGCTCCGAGGAAGAAGCT
GGTGTTGTCACGGAGATCGTAGAGCTCTGTAGCATGGAGAATCTCATGAGCCAGAAGGCCAACAAGGAAGGCGCCCAAGG
TGTGTTCATCAAGTTCTCTCACGACTCGTATTTCCGGAAGGGGGTGGCAGGGGGTTGGACGAGCCACATGACCCCTGAGA
TGGGAAGACGTCTGGATGCGATTCTCCGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29191.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis