Browse Element(s) Details


OsAffx.29206.1.S1_at

Description tigr:9636.m01485
TID=OsAffx.29206.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1484011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g14820OsAffx.29204.1.S1_at10/118+8912271..8913306hypothetical protein
LOC_Os08g14830OsAffx.29205.1.S1_at11/118+8916550..8920029NB-ARC domain containing protein
LOC_Os08g14840OsAffx.29206.1.S1_at11/118+8928261..8928875hypothetical protein
LOC_Os08g14850Os.53682.1.S1_at11/118+8933157..8946745NB-ARC domain containing protein, expressed
LOC_Os08g14850Os.39960.1.S1_at1/118+8933157..8946745NB-ARC domain containing protein, expressed
LOC_Os08g14860Os.15199.1.S1_at11/118+8948951..8953293Ubiquinol-cytochrome c reductase complex 14 kDa protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29206.1.S1_at--487--9671Chr08:8928682..8928706 (25 bp)
TCACCAGCGTCGTTGTCTGCGCACG
LOC_Os08g14840
OsAffx.29206.1.S1_at--171--5011Chr08:8928577..8928601 (25 bp)
GCAGGCGGATGATGCCAGCAGCTCT
LOC_Os08g14840
OsAffx.29206.1.S1_at--957--6291Chr08:8928570..8928594 (25 bp)
GATGATGCCAGCAGCTCTCCGTGTA
LOC_Os08g14840
OsAffx.29206.1.S1_at--281--1591Chr08:8928558..8928582 (25 bp)
AGCTCTCCGTGTACTGGCGATGTTG
LOC_Os08g14840
OsAffx.29206.1.S1_at--584--9131Chr08:8928535..8928559 (25 bp)
TGCGGCGTTCGGACCAGTGGATCTA
LOC_Os08g14840
OsAffx.29206.1.S1_at--302--10611Chr08:8928528..8928552 (25 bp)
TTCGGACCAGTGGATCTATGATGGC
LOC_Os08g14840
OsAffx.29206.1.S1_at--685--4651Chr08:8928499..8928523 (25 bp)
GCGTGCGGTACCTTTGGCGATATTC
LOC_Os08g14840
OsAffx.29206.1.S1_at--392--1751Chr08:8928490..8928514 (25 bp)
ACCTTTGGCGATATTCTGTCGAGCA
LOC_Os08g14840
OsAffx.29206.1.S1_at--453--231Chr08:8928480..8928504 (25 bp)
ATATTCTGTCGAGCAGTTGGCGGGC
LOC_Os08g14840
OsAffx.29206.1.S1_at--1094--6191Chr08:8928355..8928379 (25 bp)
GAGGCACAACGAGCTTTCCCAGTAG
LOC_Os08g14840
OsAffx.29206.1.S1_at--354--10651Chr08:8928340..8928364 (25 bp)
TTCCCAGTAGGCTCAGCCCAACAGA
LOC_Os08g14840
Target Sequence 
TCACCAGCGTCGTTGTCTGCGCACGCCGGTACGGCGACTCAGGGCAGGGCGTGGCCGGCATCAGCGGGAGAAGTTGTGGG
GTGGTTGGCAACGGCGACAGGGCGGGCAGGCGGATGATGCCAGCAGCTCTCCGTGTACTGGCGATGTTGCGGCGTTCGGA
CCAGTGGATCTATGATGGCGGCGGCGTGCGGTACCTTTGGCGATATTCTGTCGAGCAGTTGGCGGGCGTGCAGCTTGGGG
AGGCCAAGTCTGGCTGGGCCAGCTGGGCTGCGGCCCGGGTGGAGAAGGAGGAGGGGAAGGCTAGAGGCCGCGGGAGAGAG
AAGAAGGGAGGCACAACGAGCTTTCCCAGTAGGCTCAGCCCAACAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29206.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis