Browse Element(s) Details


Os.15199.1.S1_at

Description gb:AK066263.1
DB_XREF= gi:32976281
TID=Os.15199.1
CNT=20
FEA=FLmRNA
TIER=FL+Stack
STK=6
UG=Os.15199 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013059A14, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013059A14, full insert sequence.
FL= gb:AK066263.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1486011/11Ubiquinol-cytochrome c reductase complex 14 kDa protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g14840OsAffx.29206.1.S1_at11/118+8928261..8928875hypothetical protein
LOC_Os08g14850Os.53682.1.S1_at11/118+8933157..8946745NB-ARC domain containing protein, expressed
LOC_Os08g14850Os.39960.1.S1_at1/118+8933157..8946745NB-ARC domain containing protein, expressed
LOC_Os08g14860Os.15199.1.S1_at11/118+8948951..8953293Ubiquinol-cytochrome c reductase complex 14 kDa protein, putative, expressed
LOC_Os08g14870OsAffx.29207.2.S1_at11/118+8957450..8957785hypothetical protein
LOC_Os08g14870OsAffx.29207.1.S1_x_at1/118+8957450..8957785hypothetical protein
LOC_Os08g14880Os.21862.1.S1_at11/118+8961431..8964607transposon protein, putative, unclassified, expressed
LOC_Os08g14880Os.35093.1.A1_x_at3/118+8961431..8964607transposon protein, putative, unclassified, expressed
LOC_Os08g14880OsAffx.29842.3.S1_x_at1/118+8961431..8964607transposon protein, putative, unclassified, expressed
LOC_Os08g14890OsAffx.5818.1.S1_at11/118+8968896..8970845expressed protein
LOC_Os08g14900NANA8+8971186..8972365expressed protein
LOC_Os08g14910OsAffx.29209.1.S1_at10/118+8976912..8979045hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0006122biological_processmitochondrial electron transport, ubiquinol to cytochrome c
GO:0005739cellular_componentmitochondrion
GO:0008121molecular_functionubiquinol-cytochrome-c reductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15199.1.S1_at--858--9751Chr08:8952669..8952693 (25 bp)
TAATCAATATAACATGGTGCTTCAA
LOC_Os08g14860
Os.15199.1.S1_at--72--6272Chr08:8952742..8952766 (25 bp)
GATGTCATATTAACTTTGTTACCTA
LOC_Os08g14860
Os.15199.1.S1_at--24--9972Chr08:8952804..8952828 (25 bp)
TAGCTGTGATTGGAACTCAGAAACT
LOC_Os08g14860
Os.15199.1.S1_at--779--8571Chr08:8952848..8952872 (25 bp)
TGGTTAGTAATGTCGCATTCCTCTA
LOC_Os08g14860
Os.15199.1.S1_at--310--8712Chr08:8952858..8952882 (25 bp)
TGTCGCATTCCTCTAAATGTTTTTT
LOC_Os08g14860
Os.15199.1.S1_at--831--1472Chr08:8952908..8952932 (25 bp)
AGAATATTTGATGTTGTCCTTCCAA
LOC_Os08g14860
Os.15199.1.S1_at--146--6291Chr08:8952917..8952941 (25 bp)
GATGTTGTCCTTCCAAATCATTACA
LOC_Os08g14860
Os.15199.1.S1_at--790--6673Chr08:8952977..8953001 (25 bp)
GTTGCTGATGAACTTATGGCCCTGA
LOC_Os08g14860
Os.15199.1.S1_at--166--10113Chr08:8952991..8953015 (25 bp)
TATGGCCCTGAGAATACTTACAAAT
LOC_Os08g14860
Os.15199.1.S1_at--608--4952Chr08:8953016..8953040 (25 bp)
GCATTTTGTATGTTCAGGCATTGTG
LOC_Os08g14860
Os.15199.1.S1_at--599--8071Chr08:8953111..8953135 (25 bp)
GGAGCAGAACTCTTTGAATGTTTTT
LOC_Os08g14860
Target Sequence 
TAATCAATATAACATGGTGCTTCAAAAAAATTGCAGATTAGATCAATTCATTAATTTCATGCTACTATGATATGATGTCA
TATTAACTTTGTTACCTAGAATTTCTTGAATTATATAAATCTAATGATATTGTTATAGCTGTGATTGGAACTCAGAAACT
TCAACTACCAAGACAAGAATGGTTAGTAATGTCGCATTCCTCTAAATGTTTTTTTGTTGGGAGTTTATGCAAACTGCTTA
GAATATTTGATGTTGTCCTTCCAAATCATTACACAAATGCATCAAAATATGTTCTGTCTTTGTTGATGGTTGCTGATGAA
CTTATGGCCCTGAGAATACTTACAAATGCATTTTGTATGTTCAGGCATTGTGAATTTGTGATCCCCAATACAATTGAAGT
TGTTCACGGAGCTGTTCTTGGCACGATGGCTTCTTTGGTGATGGAGCAGAACTCTTTGAATGTTTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15199.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis