Browse Element(s) Details


OsAffx.29257.1.S1_at

Description tigr:9636.m01789
TID=OsAffx.29257.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1777011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g17760OsAffx.5861.1.S1_at11/118+10868890..10873100hypothetical protein
LOC_Os08g17770OsAffx.29257.1.S1_at11/118+10887509..10889497hypothetical protein
LOC_Os08g17784Os.23712.2.S1_at11/118+10893604..10903284Purple acid phosphatase, putative, expressed
LOC_Os08g17784Os.23712.1.S1_at11/118+10893604..10903284Purple acid phosphatase, putative, expressed
LOC_Os08g17800NANA8+10912318..10912743hypothetical protein
LOC_Os08g17810NANA8+10913705..10914120hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29257.1.S1_at--959--5211Chr08:10888066..10888090 (25 bp)
GAATTTTTTGCTGCCGATGCCACAG
LOC_Os08g17770
OsAffx.29257.1.S1_at--1090--6351Chr08:10888051..10888075 (25 bp)
GATGCCACAGGAAATCCGCGCGAAG
LOC_Os08g17770
OsAffx.29257.1.S1_at--602--431Chr08:10887990..10888014 (25 bp)
ATCTTGTTAGACTTCATGTTCCTCA
LOC_Os08g17770
OsAffx.29257.1.S1_at--240--10291Chr08:10887889..10887913 (25 bp)
TTTGCTGGTGGCAGCTCTTCACCTG
LOC_Os08g17770
OsAffx.29257.1.S1_at--823--931Chr08:10887821..10887845 (25 bp)
AGGCAAACACAGTAATCAGCTTCAA
LOC_Os08g17770
OsAffx.29257.1.S1_at--340--2451Chr08:10887795..10887819 (25 bp)
AACAATTCTGTTGCACCGGTGGCCG
LOC_Os08g17770
OsAffx.29257.1.S1_at--234--3871Chr08:10887765..10887789 (25 bp)
CTGATCTCCTTCAACGACTTTGTAG
LOC_Os08g17770
OsAffx.29257.1.S1_at--821--5671Chr08:10887707..10887731 (25 bp)
GACATCATATGTCTGGTGGTATCCT
LOC_Os08g17770
OsAffx.29257.1.S1_at--449--7511Chr08:10887692..10887716 (25 bp)
GTGGTATCCTGTAGCTGGATGCTCC
LOC_Os08g17770
OsAffx.29257.1.S1_at--811--591Chr08:10887613..10887637 (25 bp)
ATGCGTAACCATATCAACTTGCTCC
LOC_Os08g17770
OsAffx.29257.1.S1_at--206--9251Chr08:10887539..10887563 (25 bp)
TCCTTTGATTGAGCTTCCATATGGG
LOC_Os08g17770
Target Sequence 
GAATTTTTTGCTGCCGATGCCACAGGAAATCCGCGCGAAGCACCAGAAGAAGGACATGGCCAACGAGCGCCCCCTCATCT
TGTTAGACTTCATGTTCCTCAAAGCCATCCTTCCGACGCTCAATGTCTCACCGCGCAACCCCCTGACCCTCACCGGCGCA
ACGTTGTCGCGGCGGCCTTTGCTGGTGGCAGCTCTTCACCTGCACCACTTCAAGTTCCGGTTTTCCAGCAGGAATCGACT
GGCAAAGGCAAACACAGTAATCAGCTTCAACAACAATTCTGTTGCACCGGTGGCCGATGCCCTGATCTCCTTCAACGACT
TTGTAGGGTCGATAGCCAGGCAGGCGTTGGCGGCGATGGGACATCATATGTCTGGTGGTATCCTGTAGCTGGATGCTCCC
CAGCAGAAGCTGTACTTTGGGCCCTTCTCAACCAAGGTCCCCCTCCACCTTCCATGCGTAACCATATCAACTTGCTCCCA
ACGGCCTTGCCGCCGCAGGTTGGGATGGCCATGGACAAAGGAAAGGCTCCTTTGATTGAGCTTCCATATGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29257.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis