Browse Element(s) Details


OsAffx.5861.1.S1_at

Description tigr:9636.m01788
TID=OsAffx.5861.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1776011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g17750NANA8+10853366..10858779retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g17760OsAffx.5861.1.S1_at11/118+10868890..10873100hypothetical protein
LOC_Os08g17770OsAffx.29257.1.S1_at11/118+10887509..10889497hypothetical protein
LOC_Os08g17784Os.23712.2.S1_at11/118+10893604..10903284Purple acid phosphatase, putative, expressed
LOC_Os08g17784Os.23712.1.S1_at11/118+10893604..10903284Purple acid phosphatase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5861.1.S1_at--914--8351Chr08:10869460..10869484 (25 bp)
GGCCTTCATACCTCGGGTCGGGATG
LOC_Os08g17760
OsAffx.5861.1.S1_at--772--3691Chr08:10869413..10869437 (25 bp)
CTATGATCGAACTTCCATTTGGAGT
LOC_Os08g17760
OsAffx.5861.1.S1_at--1138--191Chr08:10869397..10869421 (25 bp)
ATTTGGAGTACCTGTGGATGACTTC
LOC_Os08g17760
OsAffx.5861.1.S1_at--300--4651Chr08:10869303..10869327 (25 bp)
GCGTACGCCTACACAGGTGCACTGA
LOC_Os08g17760
OsAffx.5861.1.S1_at--393--9631Chr08:10869254..10869278 (25 bp)
TCATGGCGCCACCAATTGATGAGCC
LOC_Os08g17760
OsAffx.5861.1.S1_at--817--51Chr08:10869240..10869264 (25 bp)
ATTGATGAGCCAACATTCACCCTCA
LOC_Os08g17760
OsAffx.5861.1.S1_at--98--8051Chr08:10869186..10869210 (25 bp)
GGAGTTGTCCACATTGTCATCACGT
LOC_Os08g17760
OsAffx.5861.1.S1_at--1147--5251Chr08:10869151..10869175 (25 bp)
GAATGCGTTGGCAGCAGTCGAAGCA
LOC_Os08g17760
OsAffx.5861.1.S1_at--1105--2711Chr08:10869131..10869155 (25 bp)
AAGCAGGAGCGCCTAACAACGCCGA
LOC_Os08g17760
OsAffx.5861.1.S1_at--925--9811Chr08:10869118..10869142 (25 bp)
TAACAACGCCGAGCCATTCATGATG
LOC_Os08g17760
OsAffx.5861.1.S1_at--515--8251Chr08:10868995..10869019 (25 bp)
GGCAGCTGAAGGGTCACTGAACATA
LOC_Os08g17760
Target Sequence 
GGCCTTCATACCTCGGGTCGGGATGACCGTGAATATAGGAAAGGCTCCTATGATCGAACTTCCATTTGGAGTACCTGTGG
ATGACTTCCTCGTCGGAGAAACCGCATATGGCGGTGCCGGACCATCCATAGGAGCCCCTAGCAACGACGCCGCTGTCGCG
TACGCCTACACAGGTGCACTGAACAACAACACAGCTGTTGGTTCTCTCATGGCGCCACCAATTGATGAGCCAACATTCAC
CCTCACCGATCCAATCGTTGGGACCAAGGGTGAAGGAGTTGTCCACATTGTCATCACGTCAGAGGATCAGAATGCGTTGG
CAGCAGTCGAAGCAGGAGCGCCTAACAACGCCGAGCCATTCATGATGCCTGATCAGGTTGATCTTGAAGAAGACATCATG
TTCTCTCTGGAATCCCTCCTGGGGTTGGACGAGGACATGATACCTATGGAAGACGCTGGCGGTGAGGCAGCTGAAGGGTC
ACTGAACATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5861.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis