Browse Element(s) Details


Os.23712.1.S1_at

Description gb:AK119420.1
DB_XREF= gi:37989043
TID=Os.23712.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.23712 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013132L04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-132-G11, full insert sequence.
FL= gb:AK119420.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1778411/11Purple acid phosphatase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g17760OsAffx.5861.1.S1_at11/118+10868890..10873100hypothetical protein
LOC_Os08g17770OsAffx.29257.1.S1_at11/118+10887509..10889497hypothetical protein
LOC_Os08g17784Os.23712.2.S1_at11/118+10893604..10903284Purple acid phosphatase, putative, expressed
LOC_Os08g17784Os.23712.1.S1_at11/118+10893604..10903284Purple acid phosphatase, putative, expressed
LOC_Os08g17800NANA8+10912318..10912743hypothetical protein
LOC_Os08g17810NANA8+10913705..10914120hypothetical protein
LOC_Os08g17820Os.49894.1.S1_at11/118+10918881..10929829transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os08g17820Os.11522.2.S1_at11/118+10918881..10929829transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os08g17820OsAffx.17050.1.S1_x_at10/118+10918881..10929829transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os08g17820Os.5188.1.S1_at1/118+10918881..10929829transposon protein, putative, CACTA, En/Spm sub-class, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003993molecular_functionacid phosphatase activity
GO:0004722molecular_functionprotein serine/threonine phosphatase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23712.1.S1_at--219--6191Chr08:10902861..10902885 (25 bp)
GAGGCAGCCGAAGCGAAGTCCAAAG
LOC_Os08g17784
Os.23712.1.S1_at--642--1091Chr08:10902941..10902965 (25 bp)
AGTGTGGTACACTACTTGTCGTTTA
LOC_Os08g17784
Os.23712.1.S1_at--736--6811Chr08:10902961..10902985 (25 bp)
GTTTATTCCAAAGTCCACACCATTG
LOC_Os08g17784
Os.23712.1.S1_at--284--2171Chr08:10902977..10903001 (25 bp)
ACACCATTGCGCATGCTTCATTAGA
LOC_Os08g17784
Os.23712.1.S1_at--703--3651Chr08:10902992..10903016 (25 bp)
CTTCATTAGAATCCCGACAGCAGCA
LOC_Os08g17784
Os.23712.1.S1_at--427--5651Chr08:10903007..10903031 (25 bp)
GACAGCAGCAACTCGCGTAGATTAT
LOC_Os08g17784
Os.23712.1.S1_at--912--751Chr08:10903041..10903065 (25 bp)
ATGTCACAAGGTGGTTCTGGTTCTA
LOC_Os08g17784
Os.23712.1.S1_at--612--8571Chr08:10903058..10903082 (25 bp)
TGGTTCTAGTGCTGCAGGTTCCTCA
LOC_Os08g17784
Os.23712.1.S1_at--963--7891Chr08:10903074..10903098 (25 bp)
GGTTCCTCAGGTGGTGGCAAATAAA
LOC_Os08g17784
Os.23712.1.S1_at--661--2311Chr08:10903096..10903120 (25 bp)
AAAGGATGAGCTCGTCTGTTCCATT
LOC_Os08g17784
Os.23712.1.S1_at--912--3031Chr08:10903167..10903191 (25 bp)
AATCCTTTCATTATTTGTGCTCGTG
LOC_Os08g17784
Target Sequence 
GAGGCAGCCGAAGCGAAGTCCAAAGGGGTTGAGGCATGCCTGGAGTTGGTTGAAAATGATGGTCACCNTATTACCGGTCC
AGTGTGGTACACTACTTGTCGTTTATTCCAAAGTCCACACCATTGCGCATGCTTCATTAGAATCCCGACAGCAGCAACTC
GCGTAGATTATATCTAGGTGATGTCACAAGGTGGTTCTGGTTCTAGTGCTGCAGGTTCCTCAGGTGGTGGCAAATAAAGG
ATGAGCTCGTCTGTTCCATTGTAGTTGTATTTGCTTGATCANCAATGTAGAANNTTTTTTTTCCAAATAATCCTTTCATT
ATTTGTGCTCGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23712.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis