Browse Element(s) Details


Os.49894.1.S1_at

Description gb:AK119299.1
DB_XREF= gi:37988922
TID=Os.49894.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49894 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-130-E10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-130-E10, full insert sequence.
FL= gb:AK119299.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1782011/11transposon protein, putative, CACTA, En/Spm sub-class, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g17784Os.23712.2.S1_at11/118+10893604..10903284Purple acid phosphatase, putative, expressed
LOC_Os08g17784Os.23712.1.S1_at11/118+10893604..10903284Purple acid phosphatase, putative, expressed
LOC_Os08g17800NANA8+10912318..10912743hypothetical protein
LOC_Os08g17810NANA8+10913705..10914120hypothetical protein
LOC_Os08g17820Os.49894.1.S1_at11/118+10918881..10929829transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os08g17820Os.11522.2.S1_at11/118+10918881..10929829transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os08g17820OsAffx.17050.1.S1_x_at10/118+10918881..10929829transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os08g17820Os.5188.1.S1_at1/118+10918881..10929829transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os08g17830OsAffx.17051.1.S1_at11/118+10932102..10938791transposon protein, putative, unclassified
LOC_Os08g17830Os.10719.1.S1_at1/118+10932102..10938791transposon protein, putative, unclassified
LOC_Os08g17830OsAffx.28164.2.S1_at1/118+10932102..10938791transposon protein, putative, unclassified
LOC_Os08g17850OsAffx.17052.1.S1_at11/118+10943776..10944434hAT family dimerisation domain containing protein
LOC_Os08g17860OsAffx.21756.3.S1_x_at1/118+10945255..10949229transposon protein, putative, Pong sub-class
LOC_Os08g17870OsAffx.17053.1.S1_x_at11/118+10953899..10960966expressed protein
LOC_Os08g17870OsAffx.17053.1.S1_at11/118+10953899..10960966expressed protein
LOC_Os08g17870Os.50996.1.S1_x_at7/118+10953899..10960966expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49894.1.S1_at--314--6091Chr08:10928733..10928757 (25 bp)
GAGTAGCTATGCCTAGTTTCGCCGG
LOC_Os08g17820
Os.49894.1.S1_at--803--10851Chr08:10928771..10928795 (25 bp)
TTGGAGGAGCGCGAGGCTACATCCC
LOC_Os08g17820
Os.49894.1.S1_at--37--9591Chr08:10928800..10929320 (25 bp)
TCATTTCTCAGGCTACTAGACCCAT
LOC_Os08g17820
Os.49894.1.S1_at--216--4851Chr08:10929307..10929331 (25 bp)
GCTACTAGACCCATCCTTGAAGATT
LOC_Os08g17820
Os.49894.1.S1_at--784--6591Chr08:10929328..10929352 (25 bp)
GATTGTAGGCTTCCATGTTTCACTT
LOC_Os08g17820
Os.49894.1.S1_at--1051--8771Chr08:10929343..10929367 (25 bp)
TGTTTCACTTAAGTACTTCTGAGCT
LOC_Os08g17820
Os.49894.1.S1_at--474--8731Chr08:10929487..10929511 (25 bp)
TGTCTTCTCTCCAATCATATCGGTA
LOC_Os08g17820
Os.49894.1.S1_at--983--9751Chr08:10929518..10929542 (25 bp)
TAATCTAGCTCCCTTTTTTATCCTT
LOC_Os08g17820
Os.49894.1.S1_at--96--751Chr08:10929593..10929617 (25 bp)
ATGTATTCGAATGTTCTTTCACCCC
LOC_Os08g17820
Os.49894.1.S1_at--285--4211Chr08:10929616..10929640 (25 bp)
CCCCGGAGTCAGTTGATTGCTGAGA
LOC_Os08g17820
Os.49894.1.S1_at--253--1211Chr08:10929647..10929671 (25 bp)
AGTTTCAGCCTAACACCTGTTCAAG
LOC_Os08g17820
Target Sequence 
GAGTAGCTATGCCTAGTTTCGCCGGCGAAAACTAGGGTTTGGAGGAGCGCGAGGCTACATCCCCTCCTCATTTCTCAGGC
TACTAGACCCATCCTTGAAGATTGTAGGCTTCCATGTTTCACTTAAGTACTTCTGAGCTGCAATGAAACCAAGGGGAGAA
ATGAGCAATGAAGTACTGGCTTGTTGGATAGAAATGTTTAATGAAGAGTGTAGAGAAGATAGCAAAATGCAATCAAACAT
AAAAAATATTTTTTATATGTCTTCTCTCCAATCATATCGGTATTTTTTTAATCTAGCTCCCTTTTTTATCCTTTTTTTTT
GCAATTTCTCCTTTTGCTTTTTTTAATCCTAATTTTTCCCCCTATGTATTCGAATGTTCTTTCACCCCCCGGAGTCAGTT
GATTGCTGAGACAAACAAGTTTCAGCCTAACACCTGTTCAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49894.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis