Browse Element(s) Details


OsAffx.17051.1.S1_at

Description tigr:9636.m01795
TID=OsAffx.17051.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=OPT oligopeptide transporter protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1783011/11transposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g17800NANA8+10912318..10912743hypothetical protein
LOC_Os08g17810NANA8+10913705..10914120hypothetical protein
LOC_Os08g17820Os.49894.1.S1_at11/118+10918881..10929829transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os08g17820Os.11522.2.S1_at11/118+10918881..10929829transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os08g17820OsAffx.17050.1.S1_x_at10/118+10918881..10929829transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os08g17820Os.5188.1.S1_at1/118+10918881..10929829transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os08g17830OsAffx.17051.1.S1_at11/118+10932102..10938791transposon protein, putative, unclassified
LOC_Os08g17830Os.10719.1.S1_at1/118+10932102..10938791transposon protein, putative, unclassified
LOC_Os08g17830OsAffx.28164.2.S1_at1/118+10932102..10938791transposon protein, putative, unclassified
LOC_Os08g17850OsAffx.17052.1.S1_at11/118+10943776..10944434hAT family dimerisation domain containing protein
LOC_Os08g17860OsAffx.21756.3.S1_x_at1/118+10945255..10949229transposon protein, putative, Pong sub-class
LOC_Os08g17870OsAffx.17053.1.S1_x_at11/118+10953899..10960966expressed protein
LOC_Os08g17870OsAffx.17053.1.S1_at11/118+10953899..10960966expressed protein
LOC_Os08g17870Os.50996.1.S1_x_at7/118+10953899..10960966expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17051.1.S1_at--1128--3911Chr08:10938268..10938292 (25 bp)
CGGCCATCTTCTGGGTCTTCTACAA
LOC_Os08g17830
OsAffx.17051.1.S1_at--65--7711Chr08:10938280..10938304 (25 bp)
GGGTCTTCTACAAGGTGTACAACAT
LOC_Os08g17830
OsAffx.17051.1.S1_at--831--1891Chr08:10938331..10938355 (25 bp)
ACGTCGCACCGTACGCGAGGGCGTA
LOC_Os08g17830
OsAffx.17051.1.S1_at--1093--9011Chr08:10938417..10938441 (25 bp)
TGCAAGCTCTTCTTCGCGATGGCAC
LOC_Os08g17830
OsAffx.17051.1.S1_at--397--10631Chr08:10938429..10938453 (25 bp)
TTCGCGATGGCACTCGCCCTGAGCG
LOC_Os08g17830
OsAffx.17051.1.S1_at--943--7011Chr08:10938497..10938521 (25 bp)
GTACATCCCGAGCACGATCGGCGTG
LOC_Os08g17830
OsAffx.17051.1.S1_at--1038--10611Chr08:10938534..10938558 (25 bp)
TTCGTGCCACCGAGGATACCTGTGG
LOC_Os08g17830
OsAffx.17051.1.S1_at--519--1791Chr08:10938542..10938566 (25 bp)
ACCGAGGATACCTGTGGGCATGGCC
LOC_Os08g17830
OsAffx.17051.1.S1_at--1118--8391Chr08:10938712..10938736 (25 bp)
GGCCGCCGATCTGCATTAAGTTCGT
LOC_Os08g17830
OsAffx.17051.1.S1_at--826--131Chr08:10938726..10938750 (25 bp)
ATTAAGTTCGTGTCTCGCTTCGAGA
LOC_Os08g17830
OsAffx.17051.1.S1_at--330--7171Chr08:10938737..10938761 (25 bp)
GTCTCGCTTCGAGAACCAGAAGCTG
LOC_Os08g17830
Target Sequence 
CGGCCATCTTCTGGGTCTTCTACAAGGTGTACAACATGGGCGGCGGCGGCGGTGACGGCGCCGACGTCGCACCGTACGCG
AGGGCGTACCGCGGCATAGCCGTGCTCAGCGTCGGCCGGCACGGGCTGCCGGACCACAGCGTCCTCCTCTGCAAGCTCTT
CTTCGCGATGGCACTCGCCCTGAGCGCGGCGAGGGAGGTGGCGGAGCGGAGGAGGTGGCGCGCGCTGCGGTACATCCCGA
GCACGATCGGCGTGGCCGTGGCGTTCTTCGTGCCACCGAGGATACCTGTGGGCATGGCCGTGGGGTGCCTGGCGCTGCAC
GTGTGGAGGAGGCACGTCGACGCCGGCGGCGCGCGGCTGCTGTTGCCGGCGGTGGCGTCGGGGCTCATCTGCGGCGACGG
GCTCGGGTCGCTAGCGTCGTCGATGCTGACGCTGCTCAGGGCGCGGCCGCCGATCTGCATTAAGTTCGTGTCTCGCTTCG
AGAACCAGAAGCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17051.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis