Browse Element(s) Details


Os.5188.1.S1_at

Description gb:AK120326.1
DB_XREF= gi:37989949
TID=Os.5188.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.5188 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-306-H08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013057O12, full insert sequence.
FL= gb:AK120326.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g178201/11transposon protein, putative, CACTA, En/Spm sub-class, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g17784Os.23712.2.S1_at11/118+10893604..10903284Purple acid phosphatase, putative, expressed
LOC_Os08g17784Os.23712.1.S1_at11/118+10893604..10903284Purple acid phosphatase, putative, expressed
LOC_Os08g17800NANA8+10912318..10912743hypothetical protein
LOC_Os08g17810NANA8+10913705..10914120hypothetical protein
LOC_Os08g17820Os.49894.1.S1_at11/118+10918881..10929829transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os08g17820Os.11522.2.S1_at11/118+10918881..10929829transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os08g17820OsAffx.17050.1.S1_x_at10/118+10918881..10929829transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os08g17820Os.5188.1.S1_at1/118+10918881..10929829transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os08g17830OsAffx.17051.1.S1_at11/118+10932102..10938791transposon protein, putative, unclassified
LOC_Os08g17830Os.10719.1.S1_at1/118+10932102..10938791transposon protein, putative, unclassified
LOC_Os08g17830OsAffx.28164.2.S1_at1/118+10932102..10938791transposon protein, putative, unclassified
LOC_Os08g17850OsAffx.17052.1.S1_at11/118+10943776..10944434hAT family dimerisation domain containing protein
LOC_Os08g17860OsAffx.21756.3.S1_x_at1/118+10945255..10949229transposon protein, putative, Pong sub-class
LOC_Os08g17870OsAffx.17053.1.S1_x_at11/118+10953899..10960966expressed protein
LOC_Os08g17870OsAffx.17053.1.S1_at11/118+10953899..10960966expressed protein
LOC_Os08g17870Os.50996.1.S1_x_at7/118+10953899..10960966expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5188.1.S1_at--716--7051Chr08:14024988..14025012 (25 bp)
GTAACTTCATCCAAATGCAGGCCTA
NONE
Os.5188.1.S1_at--988--2272Chr08:10924932..10925051 (25 bp)
AAATGCAGGCCTATAATTTTCTGAG
LOC_Os08g17820
Os.5188.1.S1_at--744--171Chr08:14024961..14024985 (25 bp)
ATTTTCTGAGTTTTTCAGCTGCTGA
NONE
Os.5188.1.S1_at--842--4771Chr08:14024944..14024968 (25 bp)
GCTGCTGAATCAAGCTCCTTTTGAA
NONE
Os.5188.1.S1_at--739--371Chr08:14024895..14024919 (25 bp)
ATCAAGTAGCTAGCAAGGCAGTTCT
NONE
Os.5188.1.S1_at--1078--1211Chr08:14024876..14024900 (25 bp)
AGTTCTGCGGTTGTGACGGGCCTAA
NONE
Os.5188.1.S1_at--574--8431Chr08:14024858..14024882 (25 bp)
GGCCTAATTACATCAGTCGCCTGAT
NONE
Os.5188.1.S1_at--692--10771Chr08:14024812..14024836 (25 bp)
TTGTTCCAAACGTTCCTTCATAGGT
NONE
Os.5188.1.S1_at--149--291NONE
ATAGGTCCACATGTCTTCTCTAGAT
NONE
Os.5188.1.S1_at--595--6371Chr08:14024771..14024795 (25 bp)
GATCCGACTCTCTAAATATTCCAGT
NONE
Os.5188.1.S1_at--205--10451Chr08:14024710..14024734 (25 bp)
TTACCTTTCAATCCAATAACCTCTC
NONE
Target Sequence 
GTAACTTCATCCAAATGCAGGCCTATAATTTTCTGAGTTTTTCAGCTGCTGAATCAAGCTCCTTTTGAAATTGAAATGAA
CAAGGGGGCAGGGATCAAGTAGCTAGCAAGGCAGTTCTGCGGTTGTGACGGGCCTAATTACATCAGTCGCCTGATATTCT
ATCAAATCTGAGTAAATTGTTCCAAACGTTCCTTCATAGGTCCACATGTCTTCTCTAGATCCGACTCTCTAAATATTCCA
GTTGGTTAGTTTACCAAAAGAGAGACTCAGAGACAAATTTACCTTTCAATCCAATAACCTCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5188.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis