Browse Element(s) Details


OsAffx.2928.1.S1_at

Description tigr:9630.m03913
TID=OsAffx.2928.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=glutaredoxin. (castor bean
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4050011/11Glutaredoxin, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g40470NANA2+24535169..24536827retrotransposon, putative, centromere-specific
LOC_Os02g40480NANA2+24539576..24542719retrotransposon protein, putative, unclassified
LOC_Os02g40490OsAffx.12429.1.S1_at10/112+24554307..2455737760S ribosomal protein, putative
LOC_Os02g40500OsAffx.2928.1.S1_at11/112+24560450..24562239Glutaredoxin, putative, expressed
LOC_Os02g40510Os.26572.1.S1_at11/112+24563620..24566537Two-component response regulator-like PRR1, putative, expressed
LOC_Os02g40520NANA2+24572108..24572527hypothetical protein
LOC_Os02g40530Os.49829.1.S1_at11/112+24574588..24576658Myb-like DNA-binding domain containing protein, expressed
LOC_Os02g40530Os.57514.1.S1_x_at1/112+24574588..24576658Myb-like DNA-binding domain containing protein, expressed
LOC_Os02g40540OsAffx.24662.1.S1_at10/112+24586467..24587608hypothetical protein
LOC_Os02g40540OsAffx.24662.1.S1_x_at10/112+24586467..24587608hypothetical protein
LOC_Os02g40540OsAffx.9323.1.S1_at5/112+24586467..24587608hypothetical protein
LOC_Os02g40540OsAffx.18095.1.S1_x_at1/112+24586467..24587608hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0008794molecular_functionarsenate reductase (glutaredoxin) activity
GO:0030508molecular_functionthiol-disulfide exchange intermediate activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2928.1.S1_at--86--10051Chr02:24560505..24560529 (25 bp)
TAGAGGAGCCCAGCAAGCCGGTCAT
LOC_Os02g40500
OsAffx.2928.1.S1_at--37--3411Chr02:24560515..24560539 (25 bp)
CAGCAAGCCGGTCATGGCGCTCGAC
LOC_Os02g40500
OsAffx.2928.1.S1_at--31--1491Chr02:24561151..24561175 (25 bp)
AGCAAGACTTATTGCCCTTTCTGCG
LOC_Os02g40500
OsAffx.2928.1.S1_at--92--10311Chr02:24561168..24561192 (25 bp)
TTTCTGCGCCCGAGTGAAGCGATTG
LOC_Os02g40500
OsAffx.2928.1.S1_at--725--1371Chr02:24561198..24561222 (25 bp)
AGAGCTGGCAGCAAGTTACAAGGCT
LOC_Os02g40500
OsAffx.2928.1.S1_at--239--1611Chr02:24561789..24561813 (25 bp)
AGCTGCAGTCAGCTCTTGCCGATTG
LOC_Os02g40500
OsAffx.2928.1.S1_at--1096--4811Chr02:24561800..24561824 (25 bp)
GCTCTTGCCGATTGGACTGGACAGA
LOC_Os02g40500
OsAffx.2928.1.S1_at--198--5471Chr02:24561825..24561849 (25 bp)
GAACTGTTCCTTGTGTCTTCATTAA
LOC_Os02g40500
OsAffx.2928.1.S1_at--60--8351Chr02:24561866..24562078 (25 bp)
GGCTGTGACGATACCATGGCGATGC
LOC_Os02g40500
OsAffx.2928.1.S1_at--131--871Chr02:24562069..24562093 (25 bp)
ATGGCGATGCACAAAGGAGGGAACT
LOC_Os02g40500
OsAffx.2928.1.S1_at--1009--5471Chr02:24562089..24562113 (25 bp)
GAACTTGGTCCCTCTGCTGACGGAG
LOC_Os02g40500
Target Sequence 
TAGAGGAGCCCAGCAAGCCGGTCATGGCGCTCGACAAGGCCAAGGAGATCGTCGCCTCCTCCCCCGTCGTCGTCTTCAGC
AAGACTTATTGCCCTTTCTGCGCCCGAGTGAAGCGATTGCTGGCAGAGCTGGCAGCAAGTTACAAGGCTGTTGAATTGGA
TGTGGAAAGTGATGGGTCTGAGCTGCAGTCAGCTCTTGCCGATTGGACTGGACAGAGAACTGTTCCTTGTGTCTTCATTA
AAGGGAAACATATTGGTGGCTGTGACGATACCATGGCGATGCACAAAGGAGGGAACTTGGTCCCTCTGCTGACGGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2928.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis