Browse Element(s) Details


OsAffx.29308.1.S1_x_at

Description tigr:9636.m02207
TID=OsAffx.29308.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2270011/11hypothetical protein
LOC_Os09g129901/11hypothetical protein
LOC_Os03g274901/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g22650OsAffx.22699.1.S1_x_at2/118+13491487..13497756retrotransposon protein, putative, unclassified
LOC_Os08g22650OsAffx.824.1.S1_at1/118+13491487..13497756retrotransposon protein, putative, unclassified
LOC_Os08g22650OsAffx.30486.1.S1_at1/118+13491487..13497756retrotransposon protein, putative, unclassified
LOC_Os08g22660NANA8+13500332..13502362retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g22670NANA8+13505085..13506482retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g22680NANA8+13506744..13510603retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g22690OsAffx.6504.1.S1_at1/118+13513720..13516371retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g22700OsAffx.29308.1.S1_x_at11/118+13520103..13521083hypothetical protein
LOC_Os08g22700OsAffx.15750.1.S1_at1/118+13520103..13521083hypothetical protein
LOC_Os08g22710OsAffx.16111.1.S1_at1/118+13522078..13523983retrotransposon protein, putative, unclassified
LOC_Os08g22740OsAffx.940.1.S1_x_at1/118+13532890..13536571retrotransposon protein, putative, unclassified
LOC_Os08g22750NANA8+13544160..13546846hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29308.1.S1_x_at--511--5771Chr08:13520171..13520195 (25 bp)
GACGATGATGATGGCCAGCACTTCG
LOC_Os08g22700
OsAffx.29308.1.S1_x_at--507--711Chr08:13520178..13520202 (25 bp)
ATGATGGCCAGCACTTCGTCTTGGG
LOC_Os08g22700
OsAffx.29308.1.S1_x_at--706--4391Chr08:13520184..13520208 (25 bp)
GCCAGCACTTCGTCTTGGGGGAACG
LOC_Os08g22700
OsAffx.29308.1.S1_x_at--459--3391Chr08:13520227..13520602 (25 bp)
CAGCGACGGGAGAAGGTGCAGCCAA
LOC_Os08g22700
OsAffx.29308.1.S1_x_at--696--7571Chr08:13520609..13520633 (25 bp)
GGGCGACGAGGTGCAGCCGACAGCA
LOC_Os08g22700
OsAffx.29308.1.S1_x_at--753--4491Chr08:13520788..13520812 (25 bp)
GCCGTCAGCAGCGACAGAATGGGCT
LOC_Os08g22700
OsAffx.29308.1.S1_x_at--897--9651Chr08:13520792..13520816 (25 bp)
TCAGCAGCGACAGAATGGGCTGGAA
LOC_Os08g22700
OsAffx.29308.1.S1_x_at--13--8551Chr08:13520850..13520874 (25 bp)
TGGAGGATGACGACGTTCTGGACGT
LOC_Os08g22700
OsAffx.29308.1.S1_x_at--147--1891Chr08:13520862..13520886 (25 bp)
ACGTTCTGGACGTCGGCATCCATGG
LOC_Os08g22700
OsAffx.29308.1.S1_x_at--278--4991Chr08:13520877..13520901 (25 bp)
GCATCCATGGCGCACCAGCTGACCT
LOC_Os08g22700
OsAffx.29308.1.S1_x_at--461--3813Chr08:13520944..13520968 (25 bp)
CTCCAGGCTCCGAGGAGGTCCCGAA
LOC_Os08g22700
Target Sequence 
GACGATGATGATGGCCAGCACTTCGTCTTGGGGGAACGACGACCGGACGGAGGCGACAGCGACGGGAGAAGGTGCAGCCA
AGGAAGAGGGCGACGAGGTGCAGCCGACAGCAGCGACGGCGCAGCAAGGCGGCGCTCCGGGGATGCCGGGGACGAGCACG
GCGAGGCGCGGCCGTCAGCAGCGACAGAATGGGCTGGAAGCGCCCGGCTCGACGGGTAGGGCCTGCCGAAGGTGGAGGAT
GACGACGTTCTGGACGTCGGCATCCATGGCGCACCAGCTGACCTCGGGCGGGGAAGAAGAGGCCGCTGCAAAGCGGATGG
TGGCGACTCCAGGCTCCGAGGAGGTCCCGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29308.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis