Browse Element(s) Details


OsAffx.824.1.S1_at

Description gb:NM_192443.1
DB_XREF= gi:34911969
GEN=P0694A04.15
TID=OsAffx.824.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0694A04.15 (P0694A04.15), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g226501/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g22610NANA8+13473754..13474557retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g22620NANA8+13475175..13479872retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g22630NANA8+13480202..13483130retrotransposon protein, putative, unclassified
LOC_Os08g22640OsAffx.24497.1.S1_at1/118+13485087..13489549retrotransposon protein, putative, LINE subclass
LOC_Os08g22650OsAffx.22699.1.S1_x_at2/118+13491487..13497756retrotransposon protein, putative, unclassified
LOC_Os08g22650OsAffx.824.1.S1_at1/118+13491487..13497756retrotransposon protein, putative, unclassified
LOC_Os08g22650OsAffx.30486.1.S1_at1/118+13491487..13497756retrotransposon protein, putative, unclassified
LOC_Os08g22660NANA8+13500332..13502362retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g22670NANA8+13505085..13506482retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g22680NANA8+13506744..13510603retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g22690OsAffx.6504.1.S1_at1/118+13513720..13516371retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g22700OsAffx.29308.1.S1_x_at11/118+13520103..13521083hypothetical protein
LOC_Os08g22700OsAffx.15750.1.S1_at1/118+13520103..13521083hypothetical protein
LOC_Os08g22710OsAffx.16111.1.S1_at1/118+13522078..13523983retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.824.1.S1_at--979--10271Chr01:27058491..27058515 (25 bp)
TTTCGCCGCATCATCTTTGCCCGTG
NONE
OsAffx.824.1.S1_at--379--9172Chr06:18064357..18064380 (24 bp)
TGCCCGTGCCGCCTTCTGGCGAGAA
NONE
OsAffx.824.1.S1_at--912--8374Chr12:22836871..22837019 (25 bp)
GGCGAGAACTCCACTCGGCGAAGGT
NONE
OsAffx.824.1.S1_at--997--9431Chr01:27058443..27058467 (25 bp)
TCGGCGAAGGTGGTGTTACCCAAGT
NONE
OsAffx.824.1.S1_at--42--7431Chr01:27058431..27058455 (25 bp)
GTGTTACCCAAGTCATGGCTTTCGC
NONE
OsAffx.824.1.S1_at--1025--2831Chr01:27058422..27058446 (25 bp)
AAGTCATGGCTTTCGCCCGTACGGC
NONE
OsAffx.824.1.S1_at--727--10613Chr12:22837081..22837105 (25 bp)
TTCGGCGTGAGCCTGTTGCTTGAAC
NONE
OsAffx.824.1.S1_at--537--5875Chr12:22837089..22837113 (25 bp)
GAGCCTGTTGCTTGAACTTTTGGTT
NONE
OsAffx.824.1.S1_at--226--6931Chr01:27058335..27058359 (25 bp)
GTAGGTTCGGCCAACGGCTCTCCGT
NONE
OsAffx.824.1.S1_at--1047--1091Chr01:27058095..27058119 (25 bp)
AGTGGGCGTGGTGCTTGAGCTCAAG
NONE
OsAffx.824.1.S1_at--99--10771Chr01:27058081..27058105 (25 bp)
TTGAGCTCAAGCGAGGTGCCTCTGG
NONE
Target Sequence 
TTTCGCCGCATCATCTTTGCCCGTGCCGCCTTCTGGCGAGAACTCCACTCGGCGAAGGTGGTGTTACCCAAGTCATGGCT
TTCGCCCGTACGGCTTCACTCTCGACCTTCACCGTCCACCTTCGGCGTGAGCCTGTTGCTTGAACTTTTGGTTTTGGTAG
GTTCGGCCAACGGCTCTCCGTGCCACTCCAACGCCGAGCGAGCTCGAGCGGTGGCGTCGGAGCTCGAGCTTGATGAGGTG
GCAGTGGGCGTGGTGCTTGAGCTCAAGCGAGGTGCCTCTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.824.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis