Browse Element(s) Details


OsAffx.29322.1.S1_x_at

Description tigr:9636.m02330
TID=OsAffx.29322.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2382910/11hypothetical protein
LOC_Os08g238496/11hypothetical protein
LOC_Os09g038203/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g127701/11retrotransposon protein, putative, unclassified
LOC_Os07g147601/11hypothetical protein
LOC_Os11g459701/11NB-ARC domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g23800OsAffx.5906.1.S1_at11/118+14275974..14277742hypothetical protein
LOC_Os08g23810Os.2695.1.S1_at11/118+14281493..14286148Enoyl, chloroplast precursor, putative, expressed
LOC_Os08g23820OsAffx.29321.1.S1_at11/118+14292491..14292937hypothetical protein
LOC_Os08g23829OsAffx.29322.1.S1_x_at10/118+14298743..14300137hypothetical protein
LOC_Os08g23840NANA8+14302066..14305267retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g23849OsAffx.29322.1.S1_x_at6/118+14306118..14306489hypothetical protein
LOC_Os08g23860NANA8+14308418..14311619retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g23870Os.5325.1.S1_at11/118+14317327..14318137Late embryogenesis abundant group 1 family protein, expressed
LOC_Os08g23880OsAffx.5908.1.S1_at11/118+14321366..14322709No apical meristem protein

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009626biological_processhypersensitive response
GO:0009814biological_processdefense response to pathogen, incompatible interaction
GO:0005737cellular_componentcytoplasm
GO:0019897cellular_componentextrinsic to plasma membrane
GO:0000166molecular_functionnucleotide binding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29322.1.S1_x_at--355--3712Chr01:5281097..5281121 (25 bp)
CTACCCAGATCGGACGGCGCCGGGA
NONE
OsAffx.29322.1.S1_x_at--531--89916Chr09:11328088..11328112 (25 bp)
TGAAGCGGCAGCTACGCGGCTAAGC
NONE
OsAffx.29322.1.S1_x_at--109--50716Chr09:11328095..11328119 (25 bp)
GCAGCTACGCGGCTAAGCGGCGGCG
NONE
OsAffx.29322.1.S1_x_at--640--83912Chr09:11328116..11328140 (25 bp)
GGCGCGACGGCTAAACGGTGCGGGA
NONE
OsAffx.29322.1.S1_x_at--979--9517Chr12:16826123..16826496 (25 bp)
AGGAGAGGCCTCACCGACAACGGTC
NONE
OsAffx.29322.1.S1_x_at--827--8294Chr09:18632014..18632162 (25 bp)
GGCTTCGGCGGCGAATCTCTACGGA
NONE
OsAffx.29322.1.S1_x_at--121--10613Chr01:5281530..5281551 (22 bp)
TTCGGCGGCGAATCTCTACGGAGGA
NONE
OsAffx.29322.1.S1_x_at--345--80516Chr12:21112128..21112155 (25 bp)
GGAGAGGCCGGTTGTTGAGGAGATT
NONE
OsAffx.29322.1.S1_x_at--549--8851Chr08:14298816..14298840 (25 bp)
TGAGGAGATTGAAGCCGGTTTTGGG
LOC_Os08g23829
OsAffx.29322.1.S1_x_at--267--6115Chr12:21112180..21112199 (20 bp)
ATGACAGGGAATAGGGATTATATAC
NONE
OsAffx.29322.1.S1_x_at--645--76719Chr12:5713872..5713892 (21 bp)
GGGATTATATACTACGCGTGATTTT
NONE
Target Sequence 
CTACCCAGATCGGACGGCGCCGGGAGCTCGCGGCCGGTGCGCGCGGGCACGGCGCAAACCGGCCCGGCGACCATGGCGCG
CGACGGCGCGGCGCACATGCGGNAGCGGCGCACATGCGGCAGCGGCGCAAGACGGCGGCCGACGGCGACCGACCGGCGGC
GGNNNNNNNNNNCTAGAGGTGAAGCGGCAGCTACGCGGCTAAGCGGCGGCGCGACGGCTAAACGGTGCGGGAGAGAGAGA
AAGAGGAGGAGAGGCCTCACCGACAACGGTCGACGACGGCGGGCGACGGAGGACGATGGCGACGGCGGGACGAGCTCCGG
AACCTCCNNNGCACGACGGGGATGGGGCTTCGGCGGCGAATCTCTACGGAGGAGGGGTGGACGAGGNNNNNNNNGNNNNC
NNNNNNNNNNNANNGGNNNNGNNGNGGNGNNGNNGNGNGNNNNGATGGGAGGAGGAAGGGGAGGAGAGGGAGATGGATCT
GAGGAGAGGAGAGGCCGGTTGTTGAGGAGATTGAAGCCGGTTTTGGGGGAGATGACAGGGAATAGGGATTATATACTACG
CGTGATTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29322.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis