Browse Element(s) Details


OsAffx.5906.1.S1_at

Description tigr:9636.m02326
TID=OsAffx.5906.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2380011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g23770Os.33601.3.S1_x_at2/118+14250874..14262006retrotransposon protein, putative, unclassified
LOC_Os08g23780Os.13608.1.S1_at11/118+14265084..14270229Glycosyltransferase QUASIMODO1, putative, expressed
LOC_Os08g23790Os.5670.1.S1_at11/118+14271321..14273725Polygalacturonase family protein, expressed
LOC_Os08g23800OsAffx.5906.1.S1_at11/118+14275974..14277742hypothetical protein
LOC_Os08g23810Os.2695.1.S1_at11/118+14281493..14286148Enoyl, chloroplast precursor, putative, expressed
LOC_Os08g23820OsAffx.29321.1.S1_at11/118+14292491..14292937hypothetical protein
LOC_Os08g23829OsAffx.29322.1.S1_x_at10/118+14298743..14300137hypothetical protein
LOC_Os08g23840NANA8+14302066..14305267retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5906.1.S1_at--424--3211Chr08:14277248..14277272 (25 bp)
CAAGGTGGAGGCATCATCGACAGGC
LOC_Os08g23800
OsAffx.5906.1.S1_at--884--5071Chr08:14277284..14277308 (25 bp)
GCACGCCTTCATCTCGAAGCAGTAG
LOC_Os08g23800
OsAffx.5906.1.S1_at--369--10071Chr08:14277312..14277336 (25 bp)
TAGGTATCATTGACCTCGGCGGCGA
LOC_Os08g23800
OsAffx.5906.1.S1_at--25--3951Chr08:14277343..14277367 (25 bp)
CGGAGTTGCTAAAGCCCTTGGCGGC
LOC_Os08g23800
OsAffx.5906.1.S1_at--439--3451Chr08:14277433..14277457 (25 bp)
CAGTCGTCGCGCTGCTGAAGCCACA
LOC_Os08g23800
OsAffx.5906.1.S1_at--453--3191Chr08:14277540..14277564 (25 bp)
CAATCTTCGCTCTATGTGGTCACAA
LOC_Os08g23800
OsAffx.5906.1.S1_at--321--791Chr08:14277553..14277577 (25 bp)
ATGTGGTCACAACTCCGACAGTAGT
LOC_Os08g23800
OsAffx.5906.1.S1_at--897--2531Chr08:14277563..14277587 (25 bp)
AACTCCGACAGTAGTGCATCTCCCA
LOC_Os08g23800
OsAffx.5906.1.S1_at--231--5431Chr08:14277607..14277631 (25 bp)
GAACCACCCACTCATTGACGTCATT
LOC_Os08g23800
OsAffx.5906.1.S1_at--496--9591Chr08:14277618..14277642 (25 bp)
TCATTGACGTCATTGCCGACTCCAC
LOC_Os08g23800
OsAffx.5906.1.S1_at--719--1691Chr08:14277641..14277665 (25 bp)
ACCAATCGGCTCATCGGTGCAGCCA
LOC_Os08g23800
Target Sequence 
CAAGGTGGAGGCATCATCGACAGGCGCCGCCACGGTGCACGCCTTCATCTCGAAGCAGTAGGACTAGGTATCATTGACCT
CGGCGGCGAGGGGGGCGGAGTTGCTAAAGCCCTTGGCGGCTTGGGCGGGGGGCGGGGGGCGAGGAGGTGGTCGAGGGTGG
CGTCAAGCTCGACCTCCTTCTCCCGCAGTCGTCGCGCTGCTGAAGCCACACGCACCAGCGCCTGGCACTGTCGCTTCTGC
ACCTACTTCAGCCCGGCGCGCATCCACTCGCACTCCATCCGCACCACCGCGTCAATCTTCGCTCTATGTGGTCACAACTC
CGACAGTAGTGCATCTCCCACCGCCATAGCCGAGGCCACGAACCACCCACTCATTGACGTCATTGCCGACTCCACCAATC
GGCTCATCGGTGCAGCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5906.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis