Browse Element(s) Details


OsAffx.29321.1.S1_at

Description tigr:9636.m02328
TID=OsAffx.29321.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2382011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g23780Os.13608.1.S1_at11/118+14265084..14270229Glycosyltransferase QUASIMODO1, putative, expressed
LOC_Os08g23790Os.5670.1.S1_at11/118+14271321..14273725Polygalacturonase family protein, expressed
LOC_Os08g23800OsAffx.5906.1.S1_at11/118+14275974..14277742hypothetical protein
LOC_Os08g23810Os.2695.1.S1_at11/118+14281493..14286148Enoyl, chloroplast precursor, putative, expressed
LOC_Os08g23820OsAffx.29321.1.S1_at11/118+14292491..14292937hypothetical protein
LOC_Os08g23829OsAffx.29322.1.S1_x_at10/118+14298743..14300137hypothetical protein
LOC_Os08g23840NANA8+14302066..14305267retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g23849OsAffx.29322.1.S1_x_at6/118+14306118..14306489hypothetical protein
LOC_Os08g23860NANA8+14308418..14311619retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g23870Os.5325.1.S1_at11/118+14317327..14318137Late embryogenesis abundant group 1 family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29321.1.S1_at--456--4671Chr08:14292605..14292629 (25 bp)
GCGTGGCGGCGGAAGAAAGCGACGA
LOC_Os08g23820
OsAffx.29321.1.S1_at--431--1871Chr08:14292626..14292650 (25 bp)
ACGACCTCGAGGGTAGCGGTGCATT
LOC_Os08g23820
OsAffx.29321.1.S1_at--739--1051Chr08:14292635..14292659 (25 bp)
AGGGTAGCGGTGCATTGCGGCGGCG
LOC_Os08g23820
OsAffx.29321.1.S1_at--441--9331Chr08:14292750..14292774 (25 bp)
TCGCCTCGGTTCAGTGCGCAGCGGA
LOC_Os08g23820
OsAffx.29321.1.S1_at--216--4612Chr08:14292828..14292852 (25 bp)
GCGAGTCGCGTGTTAAGAGGGTGAT
LOC_Os08g23820
OsAffx.29321.1.S1_at--682--8852Chr08:14292849..14292873 (25 bp)
TGATGAGGCGTATTCTTTGCGCGGA
LOC_Os08g23820
OsAffx.29321.1.S1_at--139--8892Chr08:14292852..14292876 (25 bp)
TGAGGCGTATTCTTTGCGCGGAGAC
LOC_Os08g23820
OsAffx.29321.1.S1_at--944--6212Chr08:14292853..14292877 (25 bp)
GAGGCGTATTCTTTGCGCGGAGACC
LOC_Os08g23820
OsAffx.29321.1.S1_at--26--912Chr08:14292854..14292878 (25 bp)
AGGCGTATTCTTTGCGCGGAGACCG
LOC_Os08g23820
OsAffx.29321.1.S1_at--797--8372Chr08:14292855..14292879 (25 bp)
GGCGTATTCTTTGCGCGGAGACCGC
LOC_Os08g23820
OsAffx.29321.1.S1_at--412--10292Chr08:14292864..14292888 (25 bp)
TTTGCGCGGAGACCGCGCGTGGAGA
LOC_Os08g23820
Target Sequence 
GCGTGGCGGCGGAAGAAAGCGACGACCTCGAGGGTAGCGGTGCATTGCGGCGGCGGCGGCGGCGGATGGGGACGACGTCG
GCTCCTGCTGCGGCCGGCCGCGGCGGATGGGGAAGACCACGGCTCCGGCGGTGGTTGGGAAGACCTCGCCTCGGTTCAGT
GCGCAGCGGAGGCGGTGGAGTGCACGGCGGCGGCGGCGGAATGGGACGACGACGCGAGGAGGAGCGAGTCGCGTGTTAAG
AGGGTGATGAGGCGTATTCTTTGCGCGGAGACCGCGCGTGGAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29321.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis