Browse Element(s) Details


Os.13608.1.S1_at

Description gb:AK073839.1
DB_XREF= gi:32983862
TID=Os.13608.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.13608 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033070B13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033070B13, full insert sequence.
FL= gb:AK073839.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2378011/11Glycosyltransferase QUASIMODO1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g23754Os.50306.1.S1_at11/118+14239722..14244173expressed protein
LOC_Os08g23754Os.47870.1.S1_at10/118+14239722..14244173expressed protein
LOC_Os08g23760NANA8+14247040..14250267retrotransposon protein, putative, unclassified
LOC_Os08g23770Os.33601.3.S1_x_at2/118+14250874..14262006retrotransposon protein, putative, unclassified
LOC_Os08g23780Os.13608.1.S1_at11/118+14265084..14270229Glycosyltransferase QUASIMODO1, putative, expressed
LOC_Os08g23790Os.5670.1.S1_at11/118+14271321..14273725Polygalacturonase family protein, expressed
LOC_Os08g23800OsAffx.5906.1.S1_at11/118+14275974..14277742hypothetical protein
LOC_Os08g23810Os.2695.1.S1_at11/118+14281493..14286148Enoyl, chloroplast precursor, putative, expressed
LOC_Os08g23820OsAffx.29321.1.S1_at11/118+14292491..14292937hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0016051biological_processcarbohydrate biosynthesis
GO:0045489biological_processpectin biosynthesis
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
GO:0016758molecular_functiontransferase activity, transferring hexosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.13608.1.S1_at--386--6771Chr08:14269677..14269701 (25 bp)
GTTACAACCCGCATGTGAGCAGCAG
LOC_Os08g23780
Os.13608.1.S1_at--606--6051Chr08:14269701..14269725 (25 bp)
GAGATATTGAACGTGCCGCGGTCAT
LOC_Os08g23780
Os.13608.1.S1_at--323--6611Chr08:14269759..14269783 (25 bp)
GATTGGTCTGCCCAAATTCCGAAAC
LOC_Os08g23780
Os.13608.1.S1_at--1133--3631Chr08:14269816..14269840 (25 bp)
CTTCCTGCGGGAGTGTAACATCAAT
LOC_Os08g23780
Os.13608.1.S1_at--812--851Chr08:14269853..14269877 (25 bp)
ATGGCACCTTCAATGATCCACACTG
LOC_Os08g23780
Os.13608.1.S1_at--981--8611Chr08:14269904..14269928 (25 bp)
TGGGTCTTGTGCTCTTTAGTTTAGT
LOC_Os08g23780
Os.13608.1.S1_at--602--8791Chr08:14269973..14269997 (25 bp)
TGTTAACTAGATTTCCTTGCCACCT
LOC_Os08g23780
Os.13608.1.S1_at--1115--10391Chr08:14270046..14270070 (25 bp)
TTTTGATATTACATTCTCTCCTGGG
LOC_Os08g23780
Os.13608.1.S1_at--263--291Chr08:14270086..14270110 (25 bp)
ATAGTGTGATTCTCCTGTGTATGGC
LOC_Os08g23780
Os.13608.1.S1_at--555--4891Chr08:14270109..14270133 (25 bp)
GCTTTTTAATCCCTACTTCTGCATA
LOC_Os08g23780
Os.13608.1.S1_at--339--811Chr08:14270195..14270219 (25 bp)
ATGGTGTGATTCTCCTGTGTATGGC
LOC_Os08g23780
Target Sequence 
GTTACAACCCGCATGTGAGCAGCAGAGATATTGAACGTGCCGCGGTCATACATTACAATGGCAATATGAAGCCTTGGCTG
GAGATTGGTCTGCCCAAATTCCGAAACTACTGGTCGGCATACCTCNNTTATGACCAGCCCTTCCTGCGGGAGTGTAACAT
CAATCCTTGAAGAAAGATGGCACCTTCAATGATCCACACTGACATAACCAATAGTTTTCCCCATTCGTGGGTCTTGTGCT
CTTTAGTTTAGTTTTTCTAGTATTTGATTGATNTTTTTTTTAATTGTAGATGTCAGTTGTTAACTAGATTTCCTTGCCAC
CTGTCCTTTGTATCCCTACTTCTGCATAACTGCAGATATGGTTGTAGATGTTTTGATATTACATTCTCTCCTGGGGCAGG
AAAATGTTAAATAGTGTGATTCTCCTGTGTATGGCTTTTTAATCCCTACTTCTGCATAACTGCAGATAAGTTGTAGATGT
TTTGAGACTGCATTCTNTCCTGGGGCGGAAAAATGTTATATGGTGTGATTCTCCTGTGTATGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.13608.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis