Browse Element(s) Details


Os.2695.1.S1_at

Description gb:AK070992.1
DB_XREF= gi:32981015
TID=Os.2695.1
CNT=17
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.2695 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023077K10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023077K10, full insert sequence.
FL= gb:AK070992.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2381011/11Enoyl, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g23770Os.33601.3.S1_x_at2/118+14250874..14262006retrotransposon protein, putative, unclassified
LOC_Os08g23780Os.13608.1.S1_at11/118+14265084..14270229Glycosyltransferase QUASIMODO1, putative, expressed
LOC_Os08g23790Os.5670.1.S1_at11/118+14271321..14273725Polygalacturonase family protein, expressed
LOC_Os08g23800OsAffx.5906.1.S1_at11/118+14275974..14277742hypothetical protein
LOC_Os08g23810Os.2695.1.S1_at11/118+14281493..14286148Enoyl, chloroplast precursor, putative, expressed
LOC_Os08g23820OsAffx.29321.1.S1_at11/118+14292491..14292937hypothetical protein
LOC_Os08g23829OsAffx.29322.1.S1_x_at10/118+14298743..14300137hypothetical protein
LOC_Os08g23840NANA8+14302066..14305267retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g23849OsAffx.29322.1.S1_x_at6/118+14306118..14306489hypothetical protein
LOC_Os08g23860NANA8+14308418..14311619retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0006633biological_processfatty acid biosynthesis
GO:0005835cellular_componentfatty acid synthase complex
GO:0004318molecular_functionenoyl-[acyl-carrier protein] reductase (NADH) activity
GO:0016491molecular_functionoxidoreductase activity
GO:0016631molecular_functionenoyl-[acyl-carrier protein] reductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.2695.1.S1_at--398--9811Chr08:14285207..14285500 (25 bp)
TAACACCATATCTGCAGGTCCTTTG
LOC_Os08g23810
Os.2695.1.S1_at--1049--1011Chr08:14285491..14285515 (25 bp)
AGGTCCTTTGGGAAGCCGAGCTGCC
LOC_Os08g23810
Os.2695.1.S1_at--359--9911Chr08:14285549..14285573 (25 bp)
TACTCTTATGTTAATGCACCGTTGC
LOC_Os08g23810
Os.2695.1.S1_at--944--1511Chr08:14285714..14285738 (25 bp)
AGCAGCATTCCTGGTGTCTCCATTG
LOC_Os08g23810
Os.2695.1.S1_at--688--1951Chr08:14285751..14285775 (25 bp)
ACTGGCTCGACTGTTTACGTTGACA
LOC_Os08g23810
Os.2695.1.S1_at--856--4911Chr08:14285795..14285819 (25 bp)
GCTTGCAGTTGACAGCCCTACAATA
LOC_Os08g23810
Os.2695.1.S1_at--691--6491Chr08:14285842..14285866 (25 bp)
GATAGATGGGTTTTCCTGCTTCATT
LOC_Os08g23810
Os.2695.1.S1_at--981--5671Chr08:14285958..14285982 (25 bp)
GACATTTGAGTAATTCCTGCACTGG
LOC_Os08g23810
Os.2695.1.S1_at--795--7691Chr08:14285982..14286006 (25 bp)
GGGTACTCGAGCAATACTACTAGGT
LOC_Os08g23810
Os.2695.1.S1_at--579--7891Chr08:14286007..14286031 (25 bp)
GGTTCGGAATGATTCAAGCCCCAGT
LOC_Os08g23810
Os.2695.1.S1_at--64--2671Chr08:14286022..14286046 (25 bp)
AAGCCCCAGTTACCAATGTTCTGTG
LOC_Os08g23810
Target Sequence 
TAACACCATATCTGCAGGTCCTTTGGGAAGCCGAGCTGCCAAGGCAATTGGATTCATTGAGAAGATGATAGAATACTCTT
ATGTTAATGCACCGTTGCAGAAAGAACTGTTGGCAGACGAAGTGGGGAACACAGCAGCATTCCTGGTGTCTCCATTGGCT
TCCGCTATCACTGGCTCGACTGTTTACGTTGACAATGGACTCAATACAATGGGGCTTGCAGTTGACAGCCCTACAATATC
ATCATAGGTGTGGTATGGTAGATAGATGGGTTTTCCTGCTTCATTGCGGCTTGTTTCTTGAATAAAGAGCTTAGTTAGGT
AGTATAAGAGCTAAGGGCAGGAAGAAAAAATAGAGCATGAATCCAATTTGGTCCTTGACATTTGAGTAATTCCTGCACTG
GGGTACTCGAGCAATACTACTAGGTGGTTCGGAATGATTCAAGCCCCAGTTACCAATGTTCTGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.2695.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis