Browse Element(s) Details


OsAffx.29326.1.S1_at

Description tigr:9636.m02347
TID=OsAffx.29326.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2398011/11hypothetical protein
LOC_Os01g388902/11hypothetical protein
LOC_Os11g026901/11hypothetical protein
LOC_Os05g029101/11hypothetical protein
LOC_Os08g330001/11hypothetical protein
LOC_Os05g096601/11HAD superfamily phosphatase containing protein, expressed
LOC_Os02g194601/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g23950OsAffx.29324.1.S1_at11/118+14354860..14356642hypothetical protein
LOC_Os08g23960OsAffx.29325.1.S1_at11/118+14360075..14361715F-box domain containing protein
LOC_Os08g23980OsAffx.29326.1.S1_at11/118+14377117..14377437hypothetical protein
LOC_Os08g23990OsAffx.197.1.S1_at1/118+14379435..14382366retrotransposon protein, putative, unclassified
LOC_Os08g23990OsAffx.15798.1.S1_at1/118+14379435..14382366retrotransposon protein, putative, unclassified
LOC_Os08g24000NANA8+14386180..14388018retrotransposon protein, putative, unclassified
LOC_Os08g24010NANA8+14388813..14390010retrotransposon protein, putative, unclassified
LOC_Os08g24020OsAffx.9045.1.S1_at1/118+14393569..14394430retrotransposon protein, putative, unclassified
LOC_Os08g24020OsAffx.9045.1.S1_x_at1/118+14393569..14394430retrotransposon protein, putative, unclassified
LOC_Os08g24030NANA8+14395572..14398808transposon protein, putative, unclassified
LOC_Os08g24040OsAffx.9045.1.S1_at1/118+14399438..14401396retrotransposon protein, putative, unclassified
LOC_Os08g24040OsAffx.9045.1.S1_x_at1/118+14399438..14401396retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0003677molecular_functionDNA binding
GO:0003777molecular_functionmicrotubule motor activity
GO:0003993molecular_functionacid phosphatase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29326.1.S1_at--865--6212Chr08:14377151..14377175 (25 bp)
GAGGCGATCGGCATTCTCGATCGGT
LOC_Os08g23980
OsAffx.29326.1.S1_at--215--8291Chr08:14377160..14377184 (25 bp)
GGCATTCTCGATCGGTGGAATCCAA
LOC_Os08g23980
OsAffx.29326.1.S1_at--345--7451Chr08:14377174..14377198 (25 bp)
GTGGAATCCAACACTCTGGTCGGGT
LOC_Os08g23980
OsAffx.29326.1.S1_at--179--3031Chr08:14377178..14377202 (25 bp)
AATCCAACACTCTGGTCGGGTGGCC
LOC_Os08g23980
OsAffx.29326.1.S1_at--401--9411Chr08:14377193..14377217 (25 bp)
TCGGGTGGCCCGGAACTTTCGATGA
LOC_Os08g23980
OsAffx.29326.1.S1_at--1113--4531Chr08:14377200..14377224 (25 bp)
GCCCGGAACTTTCGATGAGCTGCGT
LOC_Os08g23980
OsAffx.29326.1.S1_at--1026--20317Chr11:16325867..16325890 (24 bp)
ACTTTCGATGAGCTGCGTTCGACAG
NONE
OsAffx.29326.1.S1_at--50--8311Chr08:14377267..14377291 (25 bp)
GGCTATGAAGGCAGCATGGTGATTT
LOC_Os08g23980
OsAffx.29326.1.S1_at--655--1532Chr08:14377279..14377303 (25 bp)
AGCATGGTGATTTGTCGGCTCCGGC
LOC_Os08g23980
OsAffx.29326.1.S1_at--32--9291Chr08:14377298..14377322 (25 bp)
TCCGGCTTGCGGCTAGATTGATGGG
LOC_Os08g23980
OsAffx.29326.1.S1_at--81--1511Chr08:14377367..14377391 (25 bp)
AGCAGCGGTGGCGTTATCCATGGGT
LOC_Os08g23980
Target Sequence 
GAGGCGATCGGCATTCTCGATCGGTGGAATCCAACACTCTGGTCGGGTGGCCCGGAACTTTCGATGAGCTGCGTTCGACA
GGGAGACGGCTAGACGTAGCACTCGGGTCGTTCGGCGGCTATGAAGGCAGCATGGTGATTTGTCGGCTCCGGCTTGCGGC
TAGATTGATGGGTGGTCAATCGGAGGTCGGAGCGGGTTGTGGGCTCGAGGTGGAGCAGCAGCGGTGGCGTTATCCATGGG
T

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29326.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis