Browse Element(s) Details


OsAffx.29332.1.S1_at

Description tigr:9636.m02416
TID=OsAffx.29332.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=galactose-specific isolectin B chain - Erythrina variegata
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2467011/11Legume lectins beta domain containing protein, expressed
LOC_Os08g247702/11Legume lectins beta domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g24630Os.27296.1.A1_at11/118+14753908..14755034serine/threonine protein kinase, putative, expressed
LOC_Os08g24640OsAffx.21897.5.S1_x_at2/118+14760302..14763243retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g24650NANA8+14763560..14769655retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g24660OsAffx.29532.2.S1_at2/118+14771976..14773455transposon protein, putative, unclassified
LOC_Os08g24660OsAffx.29532.2.S1_x_at1/118+14771976..14773455transposon protein, putative, unclassified
LOC_Os08g24670OsAffx.29332.1.S1_at11/118+14776210..14777124Legume lectins beta domain containing protein, expressed
LOC_Os08g24680OsAffx.22711.4.A1_x_at2/118+14779169..14782696retrotransposon protein, putative, unclassified
LOC_Os08g24680Os.27189.2.S1_at1/118+14779169..14782696retrotransposon protein, putative, unclassified
LOC_Os08g24680OsAffx.22711.2.S1_x_at1/118+14779169..14782696retrotransposon protein, putative, unclassified
LOC_Os08g24680OsAffx.22711.4.A1_at1/118+14779169..14782696retrotransposon protein, putative, unclassified
LOC_Os08g24680OsAffx.8420.1.S1_at1/118+14779169..14782696retrotransposon protein, putative, unclassified
LOC_Os08g24680OsAffx.22927.1.S1_x_at1/118+14779169..14782696retrotransposon protein, putative, unclassified
LOC_Os08g24690OsAffx.21171.3.S1_x_at2/118+14783166..14786032retrotransposon protein, putative, unclassified
LOC_Os08g24690OsAffx.21171.4.S1_x_at1/118+14783166..14786032retrotransposon protein, putative, unclassified
LOC_Os08g24700OsAffx.5914.1.S1_at11/118+14794450..14794908hypothetical protein
LOC_Os08g24710NANA8+14800237..14803511retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
GO:0030246molecular_functioncarbohydrate binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29332.1.S1_at--704--5152Chr08:14865021..14865048 (25 bp)
GCAACTCCACGAACCAGGCGGACGG
LOC_Os08g24770
OsAffx.29332.1.S1_at--295--891Chr08:14776799..14776823 (25 bp)
AGGCGGACGGCATGGCGTTCTACGT
LOC_Os08g24670
OsAffx.29332.1.S1_at--513--5651Chr08:14776746..14776770 (25 bp)
GACATGACCGGAGGGTTCCTCGGCC
LOC_Os08g24670
OsAffx.29332.1.S1_at--478--8371Chr08:14776683..14776707 (25 bp)
GGCGTAGAGTTCGACACCTGCAGGA
LOC_Os08g24670
OsAffx.29332.1.S1_at--183--10031Chr08:14776679..14776703 (25 bp)
TAGAGTTCGACACCTGCAGGAACCC
LOC_Os08g24670
OsAffx.29332.1.S1_at--339--5011Chr08:14776664..14776688 (25 bp)
GCAGGAACCCCTGGGATCCACAGGA
LOC_Os08g24670
OsAffx.29332.1.S1_at--1086--7211Chr08:14776617..14776641 (25 bp)
GTCGACGTCAACCAGATTGTGTCCC
LOC_Os08g24670
OsAffx.29332.1.S1_at--867--2631Chr08:14776608..14776632 (25 bp)
AACCAGATTGTGTCCCAGAACTTCA
LOC_Os08g24670
OsAffx.29332.1.S1_at--959--6591Chr08:14776603..14776627 (25 bp)
GATTGTGTCCCAGAACTTCACCGCT
LOC_Os08g24670
OsAffx.29332.1.S1_at--198--8911Chr08:14776499..14776523 (25 bp)
TGACGGCCAACGGGTCGAACTACGG
LOC_Os08g24670
OsAffx.29332.1.S1_at--728--7592Chr08:14865596..14865615 (20 bp)
GGGAACTTGTCGAGTCGCACCAGCT
LOC_Os08g24770
Target Sequence 
GCAACTCCACGAACCAGGCGGACGGCATGGCGTTCTACGTCGGGCCACCGGCGGACACGCTCGCGCCGGACATGACCGGA
GGGTTCCTCGGCCTCATCCCCAACACCGGCGAAGCCTCGCCGCGCACCGTCGGCGTAGAGTTCGACACCTGCAGGAACCC
CTGGGATCCACAGGACGGCGTCATCGACCACATCGGCGTCGACGTCAACCAGATTGTGTCCCAGAACTTCACCGCTCTGC
CGACCTTGACCCTCGCCGGCGTCATGCGGGCGGAGATCAGGTACGACGCCGCCGCGAGGAAGATGGTCGTCAACCTGACG
GCCAACGGGTCGAACTACGGCGTGGAGGCGGCGGTGGACCTGAGAGCCGCCGGCTTGCCGCAGGACGCGGCCGTGGGATT
CTCGGCGGCCACCGGGGAACTTGTCGAGTCGCACCAGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29332.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis