Browse Element(s) Details


Os.27189.2.S1_at

Description gb:NM_191941.1
DB_XREF= gi:34910965
GEN=P0014E08.14
TID=Os.27189.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.27189 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0014E08.14 (P0014E08.14), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0014E08.14 (P0014E08.14), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4789011/11retrotransposon protein, putative, unclassified
LOC_Os08g246801/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g47840Os.48003.1.A1_at11/111+27713419..27715764S-locus-like receptor protein kinase, putative
LOC_Os01g47850OsAffx.1674.1.S1_at1/111+27720686..27723126transposon protein, putative, unclassified
LOC_Os01g47850OsAffx.2022.1.S1_at1/111+27720686..27723126transposon protein, putative, unclassified
LOC_Os01g47860OsAffx.21171.3.S1_x_at2/111+27723972..27726568retrotransposon protein, putative, unclassified
LOC_Os01g47860OsAffx.21171.4.S1_at1/111+27723972..27726568retrotransposon protein, putative, unclassified
LOC_Os01g47860OsAffx.21171.4.S1_x_at1/111+27723972..27726568retrotransposon protein, putative, unclassified
LOC_Os01g47860OsAffx.21171.1.S1_at1/111+27723972..27726568retrotransposon protein, putative, unclassified
LOC_Os01g47870Os.49936.2.A1_at3/111+27727574..27729593hypothetical protein
LOC_Os01g47870Os.33601.3.S1_x_at1/111+27727574..27729593hypothetical protein
LOC_Os01g47870OsAffx.15708.1.S1_at1/111+27727574..27729593hypothetical protein
LOC_Os01g47880NANA1+27732114..27733664retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g47890Os.27189.2.S1_at11/111+27736384..27739688retrotransposon protein, putative, unclassified
LOC_Os01g47890OsAffx.22711.4.A1_x_at1/111+27736384..27739688retrotransposon protein, putative, unclassified
LOC_Os01g47900Os.41771.1.S1_at11/111+27744132..27746932D-mannose binding lectin family protein, expressed
LOC_Os01g47910NANA1+27750314..27750709hypothetical protein
LOC_Os01g47920Os.33878.1.S1_at3/111+27752446..27753587hypothetical protein
LOC_Os01g47920Os.27102.1.S1_x_at1/111+27752446..27753587hypothetical protein
LOC_Os01g47930NANA1+27758920..27759138hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27189.2.S1_at--245--5891Chr01:27736891..27736915 (25 bp)
GAGCGAGCTCGCTAAGGCTCAGAGT
LOC_Os01g47890
Os.27189.2.S1_at--693--9772Chr08:14782132..14782153 (22 bp)
TAAGGCTCAGAGTACCCTTGCCGAC
LOC_Os08g24680
Os.27189.2.S1_at--625--9451Chr01:27736736..27736760 (25 bp)
TCGGCGTTCCCATGCGCCAGCATAG
LOC_Os01g47890
Os.27189.2.S1_at--101--8551Chr01:27736583..27736607 (25 bp)
TGGAGCTGGTTCTTGCAAGCCACCA
LOC_Os01g47890
Os.27189.2.S1_at--1013--8571Chr01:27736577..27736601 (25 bp)
TGGTTCTTGCAAGCCACCAAGCGCG
LOC_Os01g47890
Os.27189.2.S1_at--602--5691Chr01:27736545..27736569 (25 bp)
GACTTCATGCCGTGGTGCGCACTTG
LOC_Os01g47890
Os.27189.2.S1_at--120--9191Chr01:27736538..27736562 (25 bp)
TGCCGTGGTGCGCACTTGAAGATTT
LOC_Os01g47890
Os.27189.2.S1_at--938--4151Chr01:27736511..27736535 (25 bp)
CCCCAGGAACTGAAGCGAGGGCCCG
LOC_Os01g47890
Os.27189.2.S1_at--522--8251Chr01:27736471..27736495 (25 bp)
GGCAGCCGACGCGATTTTCTCGGGC
LOC_Os01g47890
Os.27189.2.S1_at--236--5791Chr01:27736464..27736488 (25 bp)
GACGCGATTTTCTCGGGCTTCGAGG
LOC_Os01g47890
Os.27189.2.S1_at--78--9291Chr01:27736419..27736443 (25 bp)
TCCGGGCTCGCCTCGGACGAAGAAA
LOC_Os01g47890
Target Sequence 
GAGCGAGCTCGCTAAGGCTCAGAGTACCCTTGCCGACCTGGGGCGCCTGGTGCAAGATCAGGCTGGGGAGATCGCGGCCC
TTCGCCTCACCAACGAACTCGGGCCCGGGCAGCTCTCCGACGCCGTCGCTCGGCTGGAGCGCGCGGCGCGCCGAGTCGGC
GTTCCCATGCGCCAGCATAGCCAACTTCCGCCCACACAACCAGCGCTCGCGTTCCGGTTGGACGGGCTAGCGGCGGGCCT
GGAGAGACTGGAAGAGGAGGTCGGCGAGACCATAAAGTCCTCGTCAGCTTCTTTGGCACGGGCCGCGGTGGAGCTGGTTC
TTGCAAGCCACCAAGCGCGCGACCCCGACTTCATGCCGTGGTGCGCACTTGAAGATTTTCCCCCAGGAACTGAAGCGAGG
GCCCGGGAGCAAGTTCGGGAGGCAGCCGACGCGATTTTCTCGGGCTTCGAGGGATCGGCCCCCCGCTTCACCTCCGGGCT
CGCCTCGGACGAAGAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27189.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis