Browse Element(s) Details


Os.41771.1.S1_at

Description gb:AK111612.1
DB_XREF= gi:37988275
TID=Os.41771.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.41771 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative receptor-like protein kinase (P0014E08.15), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013102N03, full insert sequence.
FL= gb:AK111622.1 gb:AK111612.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4790011/11D-mannose binding lectin family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g47850OsAffx.1674.1.S1_at1/111+27720686..27723126transposon protein, putative, unclassified
LOC_Os01g47850OsAffx.2022.1.S1_at1/111+27720686..27723126transposon protein, putative, unclassified
LOC_Os01g47860OsAffx.21171.3.S1_x_at2/111+27723972..27726568retrotransposon protein, putative, unclassified
LOC_Os01g47860OsAffx.21171.4.S1_at1/111+27723972..27726568retrotransposon protein, putative, unclassified
LOC_Os01g47860OsAffx.21171.4.S1_x_at1/111+27723972..27726568retrotransposon protein, putative, unclassified
LOC_Os01g47860OsAffx.21171.1.S1_at1/111+27723972..27726568retrotransposon protein, putative, unclassified
LOC_Os01g47870Os.49936.2.A1_at3/111+27727574..27729593hypothetical protein
LOC_Os01g47870Os.33601.3.S1_x_at1/111+27727574..27729593hypothetical protein
LOC_Os01g47870OsAffx.15708.1.S1_at1/111+27727574..27729593hypothetical protein
LOC_Os01g47880NANA1+27732114..27733664retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g47890Os.27189.2.S1_at11/111+27736384..27739688retrotransposon protein, putative, unclassified
LOC_Os01g47890OsAffx.22711.4.A1_x_at1/111+27736384..27739688retrotransposon protein, putative, unclassified
LOC_Os01g47900Os.41771.1.S1_at11/111+27744132..27746932D-mannose binding lectin family protein, expressed
LOC_Os01g47910NANA1+27750314..27750709hypothetical protein
LOC_Os01g47920Os.33878.1.S1_at3/111+27752446..27753587hypothetical protein
LOC_Os01g47920Os.27102.1.S1_x_at1/111+27752446..27753587hypothetical protein
LOC_Os01g47930NANA1+27758920..27759138hypothetical protein
LOC_Os01g47940NANA1+27764783..27767123transposon protein, putative, unclassified
LOC_Os01g47950NANA1+27769797..27770564retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g47960Os.23706.1.A1_x_at1/111+27771444..27775094retrotransposon protein, putative, unclassified
LOC_Os01g47960Os.53142.1.S1_at1/111+27771444..27775094retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0004672molecular_functionprotein kinase activity
GO:0016301molecular_functionkinase activity
GO:0030246molecular_functioncarbohydrate binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.41771.1.S1_at--470--2151Chr01:27744593..27744617 (25 bp)
ACAGCGGCGATGTGATGTCCCTAGT
LOC_Os01g47900
Os.41771.1.S1_at--724--771Chr01:27744579..27744603 (25 bp)
ATGTCCCTAGTGGATGCCAGGCTGC
LOC_Os01g47900
Os.41771.1.S1_at--240--10691Chr01:27744461..27744485 (25 bp)
TTGCCAAGTCTCTCACCGCGTTCGA
LOC_Os01g47900
Os.41771.1.S1_at--648--3711Chr01:27744415..27744439 (25 bp)
CTACCACTCTTGATCAGTACTCATG
LOC_Os01g47900
Os.41771.1.S1_at--871--1171Chr01:27744400..27744424 (25 bp)
AGTACTCATGACCACCAGGCAAATG
LOC_Os01g47900
Os.41771.1.S1_at--989--5111Chr01:27744382..27744406 (25 bp)
GCAAATGGCACGCTGGATTAACTAT
LOC_Os01g47900
Os.41771.1.S1_at--928--7011Chr01:27744353..27744377 (25 bp)
GTACATCCGTACTTAGTTCAGAGTT
LOC_Os01g47900
Os.41771.1.S1_at--757--10291Chr01:27744316..27744340 (25 bp)
TTTCTTTTTAAGCTCCTCAGAGCAT
LOC_Os01g47900
Os.41771.1.S1_at--1103--2411Chr01:27744262..27744286 (25 bp)
AAAACTTCATTTTATCTCTCAACTC
LOC_Os01g47900
Os.41771.1.S1_at--518--5471Chr01:27744225..27744249 (25 bp)
GAACTGCGCCAAATCTTTTTAATGC
LOC_Os01g47900
Os.41771.1.S1_at--742--10031Chr01:27744191..27744215 (25 bp)
TAGTTCTCTTAGTACAATGCTACAA
LOC_Os01g47900
Target Sequence 
ACAGCGGCGATGTGATGTCCCTAGTGGATGCCAGGCTGCAGGGGCAGTTCAACCCTCGGCAGGCCATGGAAATGGTGAGG
ATTTCTCTGGCGTGTATGGAGGAGAGGAGCTGCAGGCCGACCATGGACGACATTGCCAAGTCTCTCACCGCGTTCGACGA
CGAGGACGAACACCCTGCCTACCACTCTTGATCAGTACTCATGACCACCAGGCAAATGGCACGCTGGATTAACTATAGAA
GTACATCCGTACTTAGTTCAGAGTTCAGAGTTCAGAATTTCTTTTTAAGCTCCTCAGAGCATACTAATTTTGTATGAAGT
TTTTGAAAAGAAAAACTTCATTTTATCTCTCAACTCNAATAAAAGATAGAACTGCGCCAAATCTTTTTAATGCTAGACAA
ATTAGTTCTCTTAGTACAATGCTACAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.41771.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis