Browse Element(s) Details


OsAffx.22711.4.A1_at

Description gb:NM_185104.1
DB_XREF= gi:34897293
TID=OsAffx.22711.4
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBb0027B08.28), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g294801/11retrotransposon protein, putative, unclassified
LOC_Os08g246801/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g29430OsAffx.16451.1.A1_x_at1/118+17910102..17913502retrotransposon protein, putative, unclassified
LOC_Os08g29440NANA8+17916310..17917137hypothetical protein
LOC_Os08g29450OsAffx.31867.1.S1_x_at1/118+17921691..17922134hypothetical protein
LOC_Os08g29460NANA8+17924043..17925066retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g29470Os.10731.2.A1_at2/118+17929160..17930395retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g29480OsAffx.22711.4.A1_at1/118+17936289..17938961retrotransposon protein, putative, unclassified
LOC_Os08g29480OsAffx.20380.2.S1_x_at1/118+17936289..17938961retrotransposon protein, putative, unclassified
LOC_Os08g29480OsAffx.22927.1.S1_x_at1/118+17936289..17938961retrotransposon protein, putative, unclassified
LOC_Os08g29480OsAffx.22711.4.A1_x_at1/118+17936289..17938961retrotransposon protein, putative, unclassified
LOC_Os08g29490OsAffx.21171.3.S1_x_at4/118+17939945..17945538retrotransposon protein, putative, unclassified
LOC_Os08g29490OsAffx.21171.4.S1_x_at2/118+17939945..17945538retrotransposon protein, putative, unclassified
LOC_Os08g29490OsAffx.21171.4.S1_at1/118+17939945..17945538retrotransposon protein, putative, unclassified
LOC_Os08g29500Os.15617.1.S1_a_at11/118+17954736..17959137repressor protein, putative, expressed
LOC_Os08g29510OsAffx.5977.1.S1_at11/118+17960560..17962918regulatory protein, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22711.4.A1_at--379--1953Chr08:17936412..17936435 (24 bp)
ACGGCCACGATATCCGGAGCGATCC
LOC_Os08g29480
OsAffx.22711.4.A1_at--1085--3332Chr03:34775752..34775776 (25 bp)
CACGATATCCGGAGCGATCCATGCA
NONE
OsAffx.22711.4.A1_at--245--1892Chr03:34775753..34775777 (25 bp)
ACGATATCCGGAGCGATCCATGCAC
NONE
OsAffx.22711.4.A1_at--277--891Chr03:34775956..34775980 (25 bp)
AGGCCTTCTTCATTCCGTAGCTTCT
NONE
OsAffx.22711.4.A1_at--834--3651Chr03:34775960..34775984 (25 bp)
CTTCTTCATTCCGTAGCTTCTGCAA
NONE
OsAffx.22711.4.A1_at--134--10571Chr03:34775961..34775985 (25 bp)
TTCTTCATTCCGTAGCTTCTGCAAG
NONE
OsAffx.22711.4.A1_at--1011--9551Chr03:34775962..34775986 (25 bp)
TCTTCATTCCGTAGCTTCTGCAAGG
NONE
OsAffx.22711.4.A1_at--796--10551Chr03:34775964..34775988 (25 bp)
TTCATTCCGTAGCTTCTGCAAGGCG
NONE
OsAffx.22711.4.A1_at--626--9591Chr03:34775965..34775989 (25 bp)
TCATTCCGTAGCTTCTGCAAGGCGC
NONE
OsAffx.22711.4.A1_at--634--91Chr03:34775967..34775991 (25 bp)
ATTCCGTAGCTTCTGCAAGGCGCGG
NONE
OsAffx.22711.4.A1_at--980--10651Chr03:34775968..34775992 (25 bp)
TTCCGTAGCTTCTGCAAGGCGCGGT
NONE
Target Sequence 
ACGGCCACGATATCCGGAGCGATCCATGCACCTCTTGTCCTTCGCCATGACGGGCTTGATTCCGCCGTTCTCCAGATTCT
TCCATGAGGTTCTGGATTTCTACGAAATTCATGCCTTGCATCTCGCACCCAATGCCGTGATGACGCTGGCCATCTTCGTG
CATTTGTGTGAGATGTTCATTGGGGTGCGACCGACGATGCGGTTGTTCCAGGCCTTCTTCATTCCGTAGCTTCTGCAAGG
CGCGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22711.4.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis