Browse Element(s) Details


Os.15617.1.S1_a_at

Description gb:AF464902.1
DB_XREF= gi:18481619
GEN=Dr1
TID=Os.15617.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.15617 (NCBI UniGene Cluster)
DEF=Oryza sativa repressor protein (Dr1) mRNA, complete cds.
PROD=repressor protein
FL= gb:AK061580.1 gb:AF464902.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2950011/11repressor protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g29470Os.10731.2.A1_at2/118+17929160..17930395retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g29480OsAffx.22711.4.A1_at1/118+17936289..17938961retrotransposon protein, putative, unclassified
LOC_Os08g29480OsAffx.20380.2.S1_x_at1/118+17936289..17938961retrotransposon protein, putative, unclassified
LOC_Os08g29480OsAffx.22927.1.S1_x_at1/118+17936289..17938961retrotransposon protein, putative, unclassified
LOC_Os08g29480OsAffx.22711.4.A1_x_at1/118+17936289..17938961retrotransposon protein, putative, unclassified
LOC_Os08g29490OsAffx.21171.3.S1_x_at4/118+17939945..17945538retrotransposon protein, putative, unclassified
LOC_Os08g29490OsAffx.21171.4.S1_x_at2/118+17939945..17945538retrotransposon protein, putative, unclassified
LOC_Os08g29490OsAffx.21171.4.S1_at1/118+17939945..17945538retrotransposon protein, putative, unclassified
LOC_Os08g29500Os.15617.1.S1_a_at11/118+17954736..17959137repressor protein, putative, expressed
LOC_Os08g29510OsAffx.5977.1.S1_at11/118+17960560..17962918regulatory protein, putative
LOC_Os08g29520Os.18417.1.A1_at11/118+17965926..17970068Cytochrome b561 family protein, expressed
LOC_Os08g29520Os.47549.1.A1_s_at11/118+17965926..17970068Cytochrome b561 family protein, expressed
LOC_Os08g29530Os.22570.1.S1_at11/118+17970430..17975517Double-stranded RNA binding motif family protein, expressed
LOC_Os08g29540OsAffx.19069.1.S1_at1/118+17977826..17983238retrotransposon protein, putative, unclassified
LOC_Os08g29550OsAffx.29419.3.S1_at11/118+17983779..17985502hypothetical protein
LOC_Os08g29550OsAffx.21161.1.S1_at1/118+17983779..17985502hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15617.1.S1_a_at--1015--8251Chr08:17958735..17958759 (25 bp)
GGCAGAGCTGCAATCACAGTCACAA
LOC_Os08g29500
Os.15617.1.S1_a_at--671--3091Chr08:17958745..17958769 (25 bp)
CAATCACAGTCACAACCACAAACAG
LOC_Os08g29500
Os.15617.1.S1_a_at--532--8291Chr08:17958775..17958799 (25 bp)
GGCTTGGACAGTTCATGATTCAGAT
LOC_Os08g29500
Os.15617.1.S1_a_at--263--6592Chr08:17958797..17958821 (25 bp)
GATTCCATGTTGTGTAGCCTCAGTA
LOC_Os08g29500
Os.15617.1.S1_a_at--671--2431Chr08:17958827..17958851 (25 bp)
AAAAGTTGGTGTACTTCCGCTGGCA
LOC_Os08g29500
Os.15617.1.S1_a_at--1076--4211Chr08:17958843..17958867 (25 bp)
CCGCTGGCATTTACTAGGACTCTGT
LOC_Os08g29500
Os.15617.1.S1_a_at--178--10091Chr08:17958857..17958881 (25 bp)
TAGGACTCTGTGTGCCCCTTGATAG
LOC_Os08g29500
Os.15617.1.S1_a_at--1117--571Chr08:17958914..17958938 (25 bp)
ATCCAGTGTGATTTCAGTTACCATG
LOC_Os08g29500
Os.15617.1.S1_a_at--847--6591Chr08:17958979..17959003 (25 bp)
TACTTTTCCAAACACCCTTTCTCTG
LOC_Os08g29500
Os.15617.1.S1_a_at--19--2891Chr08:17959050..17959074 (25 bp)
AAGGGACTCCATTAGCAGTGTAACT
LOC_Os08g29500
Os.15617.1.S1_a_at--36--7451Chr08:17959067..17959091 (25 bp)
GTGTAACTTGACTTTTGCCGATGGC
LOC_Os08g29500
Target Sequence 
GGCAGAGCTGCAATCACAGTCACAACCACAAACAGAACATGGCTTGGACAGTTCATGATTCAGATTCCATGTTGTGTAGC
CTCAGTATAAGGAAAAGTTGGTGTACTTCCGCTGGCATTTACTAGGACTCTGTGTGCCCCTTGATAGNTTTAGGTTTCCA
TGCTTCATGTACAATGTAAATCCAGTGTGATTTCAGTTACCATGTTGCTAATAATCTGAAGCTCTCTCTAGTCACTGATG
TTANTACTTTTCCAAACACCCTTTCTCTGACTCTATGACTGTAGTAGTATCATGGCATGTATGATGCCTTGTCAAAAGGG
ACTCCATTAGCAGTGTAACTTGACTTTTGCCGATGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15617.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis