Browse Element(s) Details


Os.18417.1.A1_at

Description gb:CB627303
DB_XREF= gi:29622292
DB_XREF=OSIIEb02C20.r
CLONE=OSIIEb02C20
TID=Os.18417.1
CNT=4
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.18417 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_198679.1 (A.thaliana) AAD45585.1) (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2952011/11Cytochrome b561 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g29490OsAffx.21171.3.S1_x_at4/118+17939945..17945538retrotransposon protein, putative, unclassified
LOC_Os08g29490OsAffx.21171.4.S1_x_at2/118+17939945..17945538retrotransposon protein, putative, unclassified
LOC_Os08g29490OsAffx.21171.4.S1_at1/118+17939945..17945538retrotransposon protein, putative, unclassified
LOC_Os08g29500Os.15617.1.S1_a_at11/118+17954736..17959137repressor protein, putative, expressed
LOC_Os08g29510OsAffx.5977.1.S1_at11/118+17960560..17962918regulatory protein, putative
LOC_Os08g29520Os.18417.1.A1_at11/118+17965926..17970068Cytochrome b561 family protein, expressed
LOC_Os08g29520Os.47549.1.A1_s_at11/118+17965926..17970068Cytochrome b561 family protein, expressed
LOC_Os08g29530Os.22570.1.S1_at11/118+17970430..17975517Double-stranded RNA binding motif family protein, expressed
LOC_Os08g29540OsAffx.19069.1.S1_at1/118+17977826..17983238retrotransposon protein, putative, unclassified
LOC_Os08g29550OsAffx.29419.3.S1_at11/118+17983779..17985502hypothetical protein
LOC_Os08g29550OsAffx.21161.1.S1_at1/118+17983779..17985502hypothetical protein
LOC_Os08g29560Os.51693.1.S1_at11/118+17989347..17994597retrotransposon protein, putative, unclassified
LOC_Os08g29560Os.53737.1.S1_at5/118+17989347..17994597retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0016021cellular_componentintegral to membrane
GO:0005489molecular_functionelectron transporter activity
GO:0008805molecular_functioncarbon-monoxide oxygenase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18417.1.A1_at--928--971Chr08:17969471..17969495 (25 bp)
AGGAGTGGAAGAGCCTCCCTGCTCC
LOC_Os08g29520
Os.18417.1.A1_at--271--10611Chr08:17969510..17969534 (25 bp)
TTCGGCCTCTTCCTTTACGTTCTCG
LOC_Os08g29520
Os.18417.1.A1_at--921--10571Chr08:17969606..17969630 (25 bp)
TTCTCGACAGAAGCTATGTTTATGA
LOC_Os08g29520
Os.18417.1.A1_at--381--2151Chr08:17969612..17969636 (25 bp)
ACAGAAGCTATGTTTATGAACTCGT
LOC_Os08g29520
Os.18417.1.A1_at--1128--7571Chr08:17969661..17969685 (25 bp)
GGGCTCTTGTCATACTTGCAGTTGT
LOC_Os08g29520
Os.18417.1.A1_at--480--4811Chr08:17969663..17969687 (25 bp)
GCTCTTGTCATACTTGCAGTTGTTA
LOC_Os08g29520
Os.18417.1.A1_at--147--3611Chr08:17969666..17969690 (25 bp)
CTTGTCATACTTGCAGTTGTTACTC
LOC_Os08g29520
Os.18417.1.A1_at--437--9271Chr08:17969689..17969713 (25 bp)
TCCTGGAGTTGGCAAGATCGATACA
LOC_Os08g29520
Os.18417.1.A1_at--732--6391Chr08:17969704..17969728 (25 bp)
GATCGATACATACCGAGGCTCATCA
LOC_Os08g29520
Os.18417.1.A1_at--138--8411Chr08:17969744..17969768 (25 bp)
GGCGCGCTGTAGTTCTTGAGATGCA
LOC_Os08g29520
Os.18417.1.A1_at--344--6271Chr08:17969965..17969989 (25 bp)
GATGTTTGGGTGTTCTTAATGTATG
LOC_Os08g29520
Target Sequence 
AGGAGTGGAAGAGCCTCCCTGCTCCCCTGGCATGTCTTNTTCGGCCTCTTCCTTTACGTTCTCGCCATCGCCACAANNGN
NTNNGGACTTNTGGAGAAGTCNATCTTCATGCAGNGCGCNAAAATGATCNGGCGNTTCTCGACAGAAGCTATGTTTATGA
ACTCGTTGGGGATGTTGCTGGTGCTATTGGGGGCTCTTGTCATACTTGCAGTTGTTACTCCTGGAGTTGGCAAGATCGAT
ACATACCGAGGCTCATCAGAGTGAGAGGGAGGCGGCGCGCTGTAGTTCTTGAGATGCAGTTAGTTCTGAACGACATTTCT
GGCTCCAACTGAGGAATTTATCTGTACATCCCATTTTCACTGGAATTATTGTTACCTGTTTAGATCTGATGAAGAGAGTT
ATTTGTCGGTACACTTTTAAGTTGTAGTGGTAGATTGATGATCAAATTGACATAAATTACGGCGAAATCCATTNTGGAGG
ACGTGGGCCCCGAGATGTTTGGGTGTTCTTAATGTATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18417.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis