Browse Element(s) Details


Os.22570.1.S1_at

Description gb:AK065829.1
DB_XREF= gi:32975847
TID=Os.22570.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.22570 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013037D04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013037D04, full insert sequence.
FL= gb:AK065829.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2953011/11Double-stranded RNA binding motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g29490OsAffx.21171.3.S1_x_at4/118+17939945..17945538retrotransposon protein, putative, unclassified
LOC_Os08g29490OsAffx.21171.4.S1_x_at2/118+17939945..17945538retrotransposon protein, putative, unclassified
LOC_Os08g29490OsAffx.21171.4.S1_at1/118+17939945..17945538retrotransposon protein, putative, unclassified
LOC_Os08g29500Os.15617.1.S1_a_at11/118+17954736..17959137repressor protein, putative, expressed
LOC_Os08g29510OsAffx.5977.1.S1_at11/118+17960560..17962918regulatory protein, putative
LOC_Os08g29520Os.18417.1.A1_at11/118+17965926..17970068Cytochrome b561 family protein, expressed
LOC_Os08g29520Os.47549.1.A1_s_at11/118+17965926..17970068Cytochrome b561 family protein, expressed
LOC_Os08g29530Os.22570.1.S1_at11/118+17970430..17975517Double-stranded RNA binding motif family protein, expressed
LOC_Os08g29540OsAffx.19069.1.S1_at1/118+17977826..17983238retrotransposon protein, putative, unclassified
LOC_Os08g29550OsAffx.29419.3.S1_at11/118+17983779..17985502hypothetical protein
LOC_Os08g29550OsAffx.21161.1.S1_at1/118+17983779..17985502hypothetical protein
LOC_Os08g29560Os.51693.1.S1_at11/118+17989347..17994597retrotransposon protein, putative, unclassified
LOC_Os08g29560Os.53737.1.S1_at5/118+17989347..17994597retrotransposon protein, putative, unclassified
LOC_Os08g29570Os.17020.1.S1_x_at11/118+17995692..18000215PDR-type ABC transporter 1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009733biological_processresponse to auxin stimulus
GO:0009735biological_processresponse to cytokinin stimulus
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0035279biological_processmiRNA-mediated gene silencing, mRNA cleavage
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0003725molecular_functiondouble-stranded RNA binding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.22570.1.S1_at--274--3491Chr08:17972027..17972051 (25 bp)
CTAGTCGCTGCTGAGGAACCCAAAG
LOC_Os08g29530
Os.22570.1.S1_at--352--5951Chr08:17971967..17971991 (25 bp)
GAGCAAGCTGTCCATGTATCAAAGA
LOC_Os08g29530
Os.22570.1.S1_at--273--10751Chr08:17971894..17971918 (25 bp)
TTGCACAGTAGCATCTTGCCCTTCA
LOC_Os08g29530
Os.22570.1.S1_at--958--1191Chr08:17970809..17970833 (25 bp)
AGTTTGGATTCCATCTTTCTGTGCT
LOC_Os08g29530
Os.22570.1.S1_at--1--3571Chr08:17970720..17970744 (25 bp)
CATCAGTACAATGGGCGGTGTTCAA
LOC_Os08g29530
Os.22570.1.S1_at--913--10031Chr08:17970688..17970712 (25 bp)
TAGATTGGAGTCTGTTTCCTTTTCT
LOC_Os08g29530
Os.22570.1.S1_at--530--7231Chr08:17970568..17970592 (25 bp)
GTCCGTGCTAGGCTGGTAGTTTTAT
LOC_Os08g29530
Os.22570.1.S1_at--976--8571Chr08:17970544..17970568 (25 bp)
TGGTTGTTATCCACTCTGTTCATGT
LOC_Os08g29530
Os.22570.1.S1_at--761--2731Chr08:17970507..17970531 (25 bp)
AAGAAAATCTGTTCCGAGTCGGGAT
LOC_Os08g29530
Os.22570.1.S1_at--375--6551Chr08:17970471..17970495 (25 bp)
GATTTTGTTCTTCTATGCACTGAGA
LOC_Os08g29530
Os.22570.1.S1_at--1040--5951Chr08:17970450..17970474 (25 bp)
GAGAATCCAGATGCATTTATCCTAA
LOC_Os08g29530
Target Sequence 
CTAGTCGCTGCTGAGGAACCCAAAGTCAGACCAGCAGCTGAGCCAGCTTCCAACCCATCTGAGCAAGCTGTCCATGTATC
AAAGAAGCACAAGGATAACAAAGTCAGAGGACCAGAGGTCAAGGAAGAAAGAGTTGCACAGTAGCATCTTGCCCTTCACA
GCCTGAGGAGTTTGGATTCCATCTTTCTGTGCTGGAGGTTGACAGGCTTTGGTGACAACATGGTGCTGTGTAGGTGANAT
GCTAAGCAGCTAGTGATCATCAGTACAATGGGCGGTGTTCAAATGGCATTAGATTGGAGTCTGTTTCCTTTTCTTCTGTA
ATTAGACCAACAATATCAGTCATGTGGTAGTAGTAGTAGTGGCCGAACAAAACAGTAGCAACGCCATGAAGTATGAACTA
CNCCCGTCCGTCCGTGCTAGGCTGGTAGTTTTATGGTTGTTATCCACTCTGTTCATGTGNNNNNTGTTTAGTTCAAAGAA
AATCTGTTCCGAGTCGGGATGATCAGCAAATGATTTTGTTCTTCTATGCACTGAGAATCCAGATGCATTTATCCTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.22570.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis