Browse Element(s) Details


OsAffx.29337.1.S1_at

Description tigr:9636.m02440
TID=OsAffx.29337.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2491011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g24880OsAffx.29336.1.S1_at11/118+14926267..14931795hydroxyproline-rich glycoprotein family protein, putative
LOC_Os08g24890OsAffx.5915.1.S1_at11/118+14933949..14936121hypothetical protein
LOC_Os08g24900OsAffx.17137.1.S1_at10/118+14938060..14939635hypothetical protein
LOC_Os08g24900OsAffx.10482.1.S1_x_at1/118+14938060..14939635hypothetical protein
LOC_Os08g24900OsAffx.12972.1.S1_at1/118+14938060..14939635hypothetical protein
LOC_Os08g24910OsAffx.29337.1.S1_at11/118+14947652..14948200hypothetical protein
LOC_Os08g24920OsAffx.17138.1.S1_at11/118+14955723..14957080hypothetical protein
LOC_Os08g24930Os.24332.1.A1_at11/118+14972212..14976481expressed protein
LOC_Os08g24930OsAffx.27733.1.S1_at1/118+14972212..14976481expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29337.1.S1_at--1043--9211Chr08:14947712..14947736 (25 bp)
TCCACGCTACTCATCTTCAACGATG
LOC_Os08g24910
OsAffx.29337.1.S1_at--615--431Chr08:14947769..14947793 (25 bp)
ATCTTCTGGCGCGACATAGCAGACA
LOC_Os08g24910
OsAffx.29337.1.S1_at--1011--9451Chr08:14947773..14947797 (25 bp)
TCTGGCGCGACATAGCAGACATCGT
LOC_Os08g24910
OsAffx.29337.1.S1_at--547--9031Chr08:14947853..14947877 (25 bp)
TGCAGCTACGTGGACTCCCGCAGCG
LOC_Os08g24910
OsAffx.29337.1.S1_at--1054--9291Chr08:14947947..14947971 (25 bp)
TCCCCATCTGGCCTATGCGAGTAGA
LOC_Os08g24910
OsAffx.29337.1.S1_at--458--3531Chr08:14947951..14947975 (25 bp)
CATCTGGCCTATGCGAGTAGAGCCC
LOC_Os08g24910
OsAffx.29337.1.S1_at--259--3771Chr08:14948012..14948036 (25 bp)
CTCTACCTTGGCCTTCGAAGGTCGT
LOC_Os08g24910
OsAffx.29337.1.S1_at--59--8411Chr08:14948021..14948045 (25 bp)
GGCCTTCGAAGGTCGTTCCCTGACA
LOC_Os08g24910
OsAffx.29337.1.S1_at--1092--8931Chr08:14948068..14948092 (25 bp)
TGACGTCTTTCCCTACCTCATCGAG
LOC_Os08g24910
OsAffx.29337.1.S1_at--406--2911Chr08:14948123..14948147 (25 bp)
AAGGACCTCGACCGCTTGCTTCGTT
LOC_Os08g24910
OsAffx.29337.1.S1_at--829--6751Chr08:14948145..14948169 (25 bp)
GTTCACTCACCCCAAATCAGAGCAT
LOC_Os08g24910
Target Sequence 
TCCACGCTACTCATCTTCAACGATGCCGACCTCCTCCCCGACAACGACAACCCCCAAATCTTCTGGCGCGACATAGCAGA
CATCGTCTCCCGCGTCCTCGCCGCGTACCCGAGCCACCGGTGCATCCGCCTCACGAACGCCTGCAGCTACGTGGACTCCC
GCAGCGCCGCTGTGCTCTCGCGCTGGCTCGGCGTGCTCGCTGCCAAGGGCGTCCAGGAGCTCATCCTTGTCTTCCTCCCC
ATCTGGCCTATGCGAGTAGAGCCCCCAGCCGATGTCCTCTGCATCGCCTCCCTCCACCGCCTCTACCTTGGCCTTCGAAG
GTCGTTCCCTGACACCGAGCACATCCGCCTCGGCGCTGACGTCTTTCCCTACCTCATCGAGCTCGGCATCTGCCGCACCA
ACATGAAGGCCAAGGACCTCGACCGCTTGCTTCGTTCACTCACCCCAAATCAGAGCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29337.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis