Browse Element(s) Details


OsAffx.29403.1.S1_at

Description tigr:9636.m02831
TID=OsAffx.29403.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=NB-ARC domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2860011/11NB-ARC domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g28570OsAffx.5966.1.S1_at11/118+17319125..17323200NB-ARC domain containing protein, expressed
LOC_Os08g28580OsAffx.5967.1.S1_at11/118+17325334..17325579hypothetical protein
LOC_Os08g28590NANA8+17327223..17328560transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g28600OsAffx.29403.1.S1_at11/118+17337465..17346049NB-ARC domain containing protein
LOC_Os08g28610NANA8+17346571..17349647hypothetical protein
LOC_Os08g28620NANA8+17354449..17354676retrotransposon protein, putative, unclassified
LOC_Os08g28630OsAffx.22699.1.S1_x_at2/118+17357764..17363983retrotransposon protein, putative, unclassified
LOC_Os08g28630OsAffx.16111.1.S1_at1/118+17357764..17363983retrotransposon protein, putative, unclassified
LOC_Os08g28640OsAffx.17213.1.S1_x_at11/118+17364476..17366727hypothetical protein
LOC_Os08g28650OsAffx.29404.1.S1_at9/118+17367614..17369285hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009626biological_processhypersensitive response
GO:0009814biological_processdefense response to pathogen, incompatible interaction
GO:0005737cellular_componentcytoplasm
GO:0019897cellular_componentextrinsic to plasma membrane
GO:0000166molecular_functionnucleotide binding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29403.1.S1_at--769--2871Chr08:17338037..17338061 (25 bp)
AAGTGGATTGCACCGCTCGATAGGC
LOC_Os08g28600
OsAffx.29403.1.S1_at--1157--4891Chr08:17337939..17337963 (25 bp)
GCTTCAGTTCCATCTTTGGGTGGTA
LOC_Os08g28600
OsAffx.29403.1.S1_at--502--11Chr08:17337924..17337948 (25 bp)
TTGGGTGGTACCTCTTCGTAAAGAG
LOC_Os08g28600
OsAffx.29403.1.S1_at--1125--2111Chr08:17337881..17337905 (25 bp)
ACAGGTTTCCGTAGTCTTGTCTTAT
LOC_Os08g28600
OsAffx.29403.1.S1_at--27--3971Chr08:17337843..17337867 (25 bp)
CGGGTTGCCATGCTTAAGTTTCCAA
LOC_Os08g28600
OsAffx.29403.1.S1_at--609--1351Chr08:17337819..17337843 (25 bp)
AGAGAAGTCCATGCCAAAGCTTGAA
LOC_Os08g28600
OsAffx.29403.1.S1_at--276--851Chr08:17337754..17337778 (25 bp)
ATGGAAGCACGCATTCTGGCATTCA
LOC_Os08g28600
OsAffx.29403.1.S1_at--910--8491Chr08:17337738..17337762 (25 bp)
TGGCATTCAGCACCTCAAGAGTCTT
LOC_Os08g28600
OsAffx.29403.1.S1_at--133--3291Chr08:17337670..17337694 (25 bp)
CAAACATTGAAGCTGCGCATCGCAA
LOC_Os08g28600
OsAffx.29403.1.S1_at--158--3171Chr08:17337633..17337657 (25 bp)
AATTGCTAAGCACCCGAGTAATCTC
LOC_Os08g28600
OsAffx.29403.1.S1_at--1114--8011Chr08:17337540..17337564 (25 bp)
GGAGGATAGTGCACATCTCACTGAC
LOC_Os08g28600
Target Sequence 
AAGTGGATTGCACCGCTCGATAGGCTCACTGAGTTGAAACTTGATGTGTGGGAGCTGGAGGATGAAGATTTGGATTTGCT
TGCTCATCTGCCGGTGCTGCTTCAGTTCCATCTTTGGGTGGTACCTCTTCGTAAAGAGAAAATTGTCATTAAGGAAACAG
GTTTCCGTAGTCTTGTCTTATTCCTCCTGTGGTCCGGGTTGCCATGCTTAAGTTTCCAAGAGAAGTCCATGCCAAAGCTT
GAAACCCTCAAGTTGATGTACAGTGCTTGCGGGGCAGAATTATATGGAAGCACGCATTCTGGCATTCAGCACCTCAAGAG
TCTTAAAAATGTCCATGTTGAGATGTATACAGCTGGTGCCATACAATCAAACATTGAAGCTGCGCATCGCAACATCAATC
ACGAAATTGCTAAGCACCCGAGTAATCTCAAGACCAATATTACTATTAGTAGTTATATATACTTTGGGGAGGTAATGAAT
GATGGCAATGTTGATGAGGAGGATAGTGCACATCTCACTGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29403.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis