Browse Element(s) Details


OsAffx.5967.1.S1_at

Description tigr:9636.m02829
TID=OsAffx.5967.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2858011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g28550OsAffx.29402.1.S1_at11/118+17301449..17302093hypothetical protein
LOC_Os08g28560Os.53676.1.S1_at11/118+17306752..17310881expressed protein
LOC_Os08g28570OsAffx.5966.1.S1_at11/118+17319125..17323200NB-ARC domain containing protein, expressed
LOC_Os08g28580OsAffx.5967.1.S1_at11/118+17325334..17325579hypothetical protein
LOC_Os08g28590NANA8+17327223..17328560transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g28600OsAffx.29403.1.S1_at11/118+17337465..17346049NB-ARC domain containing protein
LOC_Os08g28610NANA8+17346571..17349647hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5967.1.S1_at--334--1751Chr08:17325392..17325416 (25 bp)
ACCTCAAGGATGGATGGCAGACGGC
LOC_Os08g28580
OsAffx.5967.1.S1_at--10--6251Chr08:17325400..17325424 (25 bp)
GATGGATGGCAGACGGCAGCTTCGC
LOC_Os08g28580
OsAffx.5967.1.S1_at--19--3371Chr08:17325425..17325449 (25 bp)
CACCGCGGCGTGTGGACAGGAAGGA
LOC_Os08g28580
OsAffx.5967.1.S1_at--208--971Chr08:17325449..17325473 (25 bp)
AGGACCATGGTCATTGGGCCGCACC
LOC_Os08g28580
OsAffx.5967.1.S1_at--628--9591Chr08:17325459..17325483 (25 bp)
TCATTGGGCCGCACCAAGTGAGGAC
LOC_Os08g28580
OsAffx.5967.1.S1_at--1037--4511Chr08:17325466..17325490 (25 bp)
GCCGCACCAAGTGAGGACGCTGTGA
LOC_Os08g28580
OsAffx.5967.1.S1_at--1156--1691Chr08:17325471..17325495 (25 bp)
ACCAAGTGAGGACGCTGTGACGAAT
LOC_Os08g28580
OsAffx.5967.1.S1_at--1028--5791Chr08:17325481..17325505 (25 bp)
GACGCTGTGACGAATGACGTCCAAG
LOC_Os08g28580
OsAffx.5967.1.S1_at--782--9191Chr08:17325500..17325524 (25 bp)
TCCAAGATTGGACACTATTTCGAAT
LOC_Os08g28580
OsAffx.5967.1.S1_at--500--191Chr08:17325516..17325540 (25 bp)
ATTTCGAATAGCGTCCACGGCTGGA
LOC_Os08g28580
OsAffx.5967.1.S1_at--800--5231Chr08:17325521..17325545 (25 bp)
GAATAGCGTCCACGGCTGGACGCTC
LOC_Os08g28580
Target Sequence 
ACCTCAAGGATGGATGGCAGACGGCAGCTTCGCCACCGCGGCGTGTGGACAGGAAGGAGGACCATGGTCATTGGGCCGCA
CCAAGTGAGGACGCTGTGACGAATGACGTCCAAGATTGGACACTATTTCGAATAGCGTCCACGGCTGGACGCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5967.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis