Browse Element(s) Details


OsAffx.29402.1.S1_at

Description tigr:9636.m02826
TID=OsAffx.29402.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2855011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g28510OsAffx.5965.1.S1_at11/118+17272381..17277484hypothetical protein
LOC_Os08g28520Os.46012.3.S1_at4/118+17284464..17286535retrotransposon protein, putative, unclassified
LOC_Os08g28520Os.46012.2.S1_x_at3/118+17284464..17286535retrotransposon protein, putative, unclassified
LOC_Os08g28520Os.46012.3.S1_x_at3/118+17284464..17286535retrotransposon protein, putative, unclassified
LOC_Os08g28520Os.27088.1.A1_x_at3/118+17284464..17286535retrotransposon protein, putative, unclassified
LOC_Os08g28530NANA8+17289335..17293458retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g28540OsAffx.29401.1.S1_at11/118+17294555..17298598NB-ARC domain containing protein
LOC_Os08g28550OsAffx.29402.1.S1_at11/118+17301449..17302093hypothetical protein
LOC_Os08g28560Os.53676.1.S1_at11/118+17306752..17310881expressed protein
LOC_Os08g28570OsAffx.5966.1.S1_at11/118+17319125..17323200NB-ARC domain containing protein, expressed
LOC_Os08g28580OsAffx.5967.1.S1_at11/118+17325334..17325579hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29402.1.S1_at--512--7711Chr08:17301997..17302021 (25 bp)
GGGTGCCCAGAGAATATACAGATGA
LOC_Os08g28550
OsAffx.29402.1.S1_at--95--7051Chr08:17301915..17301939 (25 bp)
GTAAAGCCAGAGACCCAATTGACTT
LOC_Os08g28550
OsAffx.29402.1.S1_at--174--8931Chr08:17301896..17301920 (25 bp)
TGACTTGGCGTATATCATTGATAAC
LOC_Os08g28550
OsAffx.29402.1.S1_at--58--1431Chr08:17301802..17301826 (25 bp)
AGAAAACCCACCTCTGATGTCCTGA
LOC_Os08g28550
OsAffx.29402.1.S1_at--504--6271Chr08:17301787..17301811 (25 bp)
GATGTCCTGAACATCAACTCGGATG
LOC_Os08g28550
OsAffx.29402.1.S1_at--737--731Chr08:17301723..17301747 (25 bp)
ATGTTATTCGGGATCATCATGGACG
LOC_Os08g28550
OsAffx.29402.1.S1_at--276--7991Chr08:17301659..17301683 (25 bp)
GGATGCATTCCATTCTGAGATTATT
LOC_Os08g28550
OsAffx.29402.1.S1_at--398--6551Chr08:17301641..17301665 (25 bp)
GATTATTGCTTGTGCAGCGGCTGTA
LOC_Os08g28550
OsAffx.29402.1.S1_at--360--10271Chr08:17301580..17301604 (25 bp)
TTTGAAATAGGCTCGCTGCTGCTGA
LOC_Os08g28550
OsAffx.29402.1.S1_at--354--911Chr08:17301572..17301596 (25 bp)
AGGCTCGCTGCTGCTGAAGTCTACA
LOC_Os08g28550
OsAffx.29402.1.S1_at--730--1431Chr08:17301540..17301564 (25 bp)
AGAACTCTTTCAATCTCTCTGTCAT
LOC_Os08g28550
Target Sequence 
GGGTGCCCAGAGAATATACAGATGAGAGCTGTCGTTTGTTTGTGGCAATGGTGGAAGCAGATGAATGAAGTGAGGGAAGG
AGGTAAAGCCAGAGACCCAATTGACTTGGCGTATATCATTGATAACCAGGGAGAGGAATTCTTGAAGTTGAATTGGAAAG
AGGGGAAGTTGAAGGAGAGGAGAATGGCAAAATGGAGAAAACCCACCTCTGATGTCCTGAACATCAACTCGGATGGGGCC
TTCCACAGCAGCACCAAACAAGGCGGATGGGGATATGTTATTCGGGATCATCATGGACGGGTGGTTCAGGCTGGAGCTGG
CGGAGCTGATAACATGATGGATGCATTCCATTCTGAGATTATTGCTTGTGCAGCGGCTGTAGGGGCGGCAAGTGAAAGGG
GGATAATGAAGGTAGAGTTTGAAATAGGCTCGCTGCTGCTGAAGTCTACACTCCAGGAGAACTCTTTCAATCTCTCTGTC
AT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29402.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis