Browse Element(s) Details


OsAffx.29401.1.S1_at

Description tigr:9636.m02825
TID=OsAffx.29401.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=NB-ARC domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2854011/11NB-ARC domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g28500Os.46012.2.S1_x_at6/118+17264300..17269960retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g28500Os.46012.3.S1_x_at4/118+17264300..17269960retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g28500Os.27088.1.A1_x_at3/118+17264300..17269960retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g28510OsAffx.5965.1.S1_at11/118+17272381..17277484hypothetical protein
LOC_Os08g28520Os.46012.3.S1_at4/118+17284464..17286535retrotransposon protein, putative, unclassified
LOC_Os08g28520Os.46012.2.S1_x_at3/118+17284464..17286535retrotransposon protein, putative, unclassified
LOC_Os08g28520Os.46012.3.S1_x_at3/118+17284464..17286535retrotransposon protein, putative, unclassified
LOC_Os08g28520Os.27088.1.A1_x_at3/118+17284464..17286535retrotransposon protein, putative, unclassified
LOC_Os08g28530NANA8+17289335..17293458retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g28540OsAffx.29401.1.S1_at11/118+17294555..17298598NB-ARC domain containing protein
LOC_Os08g28550OsAffx.29402.1.S1_at11/118+17301449..17302093hypothetical protein
LOC_Os08g28560Os.53676.1.S1_at11/118+17306752..17310881expressed protein
LOC_Os08g28570OsAffx.5966.1.S1_at11/118+17319125..17323200NB-ARC domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29401.1.S1_at--284--351Chr08:17298024..17298048 (25 bp)
ATAACCTCCGTCGTCTATATATCGT
LOC_Os08g28540
OsAffx.29401.1.S1_at--637--10411Chr08:17298052..17298076 (25 bp)
TTATACCGAATTGCCTAACAGCCTC
LOC_Os08g28540
OsAffx.29401.1.S1_at--87--8951Chr08:17298121..17298145 (25 bp)
TGACATCTCTGACTCACCTATGGTA
LOC_Os08g28540
OsAffx.29401.1.S1_at--1144--2111Chr08:17298145..17298169 (25 bp)
ACAGGTTCCGAGTTGGATGCGCTCA
LOC_Os08g28540
OsAffx.29401.1.S1_at--69--611Chr08:17298161..17298185 (25 bp)
ATGCGCTCATTCGTCCAGCTTAAAA
LOC_Os08g28540
OsAffx.29401.1.S1_at--308--8871Chr08:17298214..17298238 (25 bp)
TGATGAAGATCTAACCACCCTCGGT
LOC_Os08g28540
OsAffx.29401.1.S1_at--966--3771Chr08:17298249..17298273 (25 bp)
CTCTGCTACATCTTCATCTCAATAT
LOC_Os08g28540
OsAffx.29401.1.S1_at--1150--991Chr08:17298297..17298321 (25 bp)
AGGATAGGCTCCTCATCAGTGGCTG
LOC_Os08g28540
OsAffx.29401.1.S1_at--659--871Chr08:17298341..17298365 (25 bp)
AGGCAGTTTTATCTCACGGGTCAGC
LOC_Os08g28540
OsAffx.29401.1.S1_at--877--7691Chr08:17298358..17298382 (25 bp)
GGGTCAGCAGCCAATTTTTACAGCG
LOC_Os08g28540
OsAffx.29401.1.S1_at--320--1211Chr08:17298438..17298462 (25 bp)
AGTTTCTAACTAATGCTTCTCTTGA
LOC_Os08g28540
Target Sequence 
ATAACCTCCGTCGTCTATATATCGTGGGTTATACCGAATTGCCTAACAGCCTCTTACCAGATCCGTGGTGCCCTTCACCA
CTTAAACTCGAAGAACTTGACATCTCTGACTCACCTATGGTACAGGTTCCGAGTTGGATGCGCTCATTCGTCCAGCTTAA
AAGGTTAGGCCTTATTCTAAAGGATGTCAGTGATGAAGATCTAACCACCCTCGGTCGCCTACCTTCTCTGCTACATCTTC
ATCTCAATATACCAAGAGGAGAACCAGGGTACGAGGATAGGCTCCTCATCAGTGGCTGCCATGGATTCTCATGCTTGAGG
CAGTTTTATCTCACGGGTCAGCAGCCAATTTTTACAGCGGGATCTATGCCAAGGCTAGAGCTACTCAGAGTTGAAATGGA
TGAATCTAAGCCAGAGTTTCTAACTAATGCTTCTCTTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29401.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis