Browse Element(s) Details


OsAffx.5966.1.S1_at

Description tigr:9636.m02828
TID=OsAffx.5966.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=resistance protein, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2857011/11NB-ARC domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g28540OsAffx.29401.1.S1_at11/118+17294555..17298598NB-ARC domain containing protein
LOC_Os08g28550OsAffx.29402.1.S1_at11/118+17301449..17302093hypothetical protein
LOC_Os08g28560Os.53676.1.S1_at11/118+17306752..17310881expressed protein
LOC_Os08g28570OsAffx.5966.1.S1_at11/118+17319125..17323200NB-ARC domain containing protein, expressed
LOC_Os08g28580OsAffx.5967.1.S1_at11/118+17325334..17325579hypothetical protein
LOC_Os08g28590NANA8+17327223..17328560transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g28600OsAffx.29403.1.S1_at11/118+17337465..17346049NB-ARC domain containing protein
LOC_Os08g28610NANA8+17346571..17349647hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009613biological_processresponse to pest, pathogen or parasite
GO:0009626biological_processhypersensitive response
GO:0019897cellular_componentextrinsic to plasma membrane
GO:0000166molecular_functionnucleotide binding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5966.1.S1_at--160--2511Chr08:17322303..17322327 (25 bp)
AACATCTACTTACCAGATCCCTGGT
LOC_Os08g28570
OsAffx.5966.1.S1_at--451--4771Chr08:17322333..17322357 (25 bp)
GCTCCGCTTAAACTCGAAGGACTTG
LOC_Os08g28570
OsAffx.5966.1.S1_at--339--5311Chr08:17322348..17322372 (25 bp)
GAAGGACTTGACATCTCAGGCTCAC
LOC_Os08g28570
OsAffx.5966.1.S1_at--172--3031Chr08:17322374..17322398 (25 bp)
AATGCCACGAGTTCCAACTTGGATA
LOC_Os08g28570
OsAffx.5966.1.S1_at--59--6311Chr08:17322395..17322419 (25 bp)
GATAGGTTCGTTGGTCAACCTCAAA
LOC_Os08g28570
OsAffx.5966.1.S1_at--231--2911Chr08:17322419..17322443 (25 bp)
AAGGTTAGGCCTTGCTCTAGAGGGA
LOC_Os08g28570
OsAffx.5966.1.S1_at--79--431Chr08:17322465..17322489 (25 bp)
ATCATCGGATGTTTACCTTCTCTGC
LOC_Os08g28570
OsAffx.5966.1.S1_at--378--8331Chr08:17322540..17322564 (25 bp)
GGCTGCTATGGATTCTCTTGTTTGA
LOC_Os08g28570
OsAffx.5966.1.S1_at--735--6131Chr08:17322563..17322587 (25 bp)
GAGGGACTTTTGTTTCATCGGGCAA
LOC_Os08g28570
OsAffx.5966.1.S1_at--93--3031Chr08:17322672..17322696 (25 bp)
AATGCTGCTCTAGAAAATCTCCCCT
LOC_Os08g28570
OsAffx.5966.1.S1_at--673--5751Chr08:17322704..17322728 (25 bp)
GACGGTCCAGTATTTGCTTTACCAA
LOC_Os08g28570
Target Sequence 
AACATCTACTTACCAGATCCCTGGTGCCCTGCTCCGCTTAAACTCGAAGGACTTGACATCTCAGGCTCACCAATGCCACG
AGTTCCAACTTGGATAGGTTCGTTGGTCAACCTCAAAAGGTTAGGCCTTGCTCTAGAGGGAGTGAATTGTGAAGATCTAT
CAATCATCGGATGTTTACCTTCTCTGCTACAGCTTTCTCTCCGTGTACCAGGGTACAGAGACAGTCTCATAATCAGTGGC
TGCTATGGATTCTCTTGTTTGAGGGACTTTTGTTTCATCGGGCAACAACCAATTTTTACAGCGGGATCAATGCCAAGGCT
AGAACTACTCATACTCAATATAAATGCATCTAAACCAGAGACTGTGACTAATGCTGCTCTAGAAAATCTCCCCTGCCTCA
TGACGGTCCAGTATTTGCTTTACCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5966.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis