Browse Element(s) Details


OsAffx.17213.1.S1_x_at

Description tigr:9636.m02835
TID=OsAffx.17213.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2864011/11hypothetical protein
LOC_Os11g228701/11hypothetical protein
LOC_Os05g202801/11hypothetical protein
LOC_Os06g300801/11hypothetical protein
LOC_Os12g224001/11hypothetical protein
LOC_Os10g134701/11hypothetical protein
LOC_Os08g123601/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g28600OsAffx.29403.1.S1_at11/118+17337465..17346049NB-ARC domain containing protein
LOC_Os08g28610NANA8+17346571..17349647hypothetical protein
LOC_Os08g28620NANA8+17354449..17354676retrotransposon protein, putative, unclassified
LOC_Os08g28630OsAffx.22699.1.S1_x_at2/118+17357764..17363983retrotransposon protein, putative, unclassified
LOC_Os08g28630OsAffx.16111.1.S1_at1/118+17357764..17363983retrotransposon protein, putative, unclassified
LOC_Os08g28640OsAffx.17213.1.S1_x_at11/118+17364476..17366727hypothetical protein
LOC_Os08g28650OsAffx.29404.1.S1_at9/118+17367614..17369285hypothetical protein
LOC_Os08g28660OsAffx.5968.1.S1_at11/118+17373312..17374386hypothetical protein
LOC_Os08g28670Os.51490.1.S1_at11/118+17377243..17378834ripening induced protein, putative, expressed
LOC_Os08g28670Os.9301.1.S1_at10/118+17377243..17378834ripening induced protein, putative, expressed
LOC_Os08g28670Os.9301.1.S1_x_at8/118+17377243..17378834ripening induced protein, putative, expressed
LOC_Os08g28680Os.10883.1.S1_at11/118+17380193..17383258Ubiquitin-conjugating enzyme E2 M, putative, expressed
LOC_Os08g28690Os.9391.1.S1_at11/118+17385534..17390235expressed protein
LOC_Os08g28690Os.48160.1.A1_s_at11/118+17385534..17390235expressed protein
LOC_Os08g28690Os.9391.1.S2_at11/118+17385534..17390235expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17213.1.S1_x_at--117--3153Chr10:7044804..7044827 (24 bp)
AATTCAAGCCCTAGTCCCGGATGAT
LOC_Os10g13470
OsAffx.17213.1.S1_x_at--555--3912Chr12:12648784..12648807 (24 bp)
CTGGCGAATACCATCTCTCCAGCTA
LOC_Os12g22400
OsAffx.17213.1.S1_x_at--120--1711Chr08:17364800..17364824 (25 bp)
AGCCAATCGGCAAACCGTTCATGAA
LOC_Os08g28640
OsAffx.17213.1.S1_x_at--122--3871Chr08:17364750..17364774 (25 bp)
CTGTTGGGCCGATTCTAACCAATAT
LOC_Os08g28640
OsAffx.17213.1.S1_x_at--56--10172Chr11:12672448..12672467 (20 bp)
TATAGATCGGCTTGAGGCTCGAAGG
LOC_Os11g22870
OsAffx.17213.1.S1_x_at--934--2891Chr08:17364707..17364731 (25 bp)
AAGGATAGATCTCATAGCTCAACTG
LOC_Os08g28640
OsAffx.17213.1.S1_x_at--110--8011Chr08:17364683..17364707 (25 bp)
GGAGGAATGCAATGCCGAACTGGCT
LOC_Os08g28640
OsAffx.17213.1.S1_x_at--741--4511Chr08:17364670..17364694 (25 bp)
GCCGAACTGGCTCTTGAGCAGAAGA
LOC_Os08g28640
OsAffx.17213.1.S1_x_at--705--6651Chr08:17364622..17364646 (25 bp)
GTTGAGGAGCAGAAATCGAGACTCA
LOC_Os08g28640
OsAffx.17213.1.S1_x_at--659--9353Chr08:17364607..17364631 (25 bp)
TCGAGACTCAAATCGGCTATCAGGA
LOC_Os08g28640
OsAffx.17213.1.S1_x_at--852--1911Chr08:17364582..17364606 (25 bp)
ACGTGGCCGATTTGACTAAGTCTCT
LOC_Os08g28640
Target Sequence 
AATTCAAGCCCTAGTCCCGGATGATCTGGCGAATACCATCTCTCCAGCTATGTACCTCGAGCAACATCAATTCAAGCTAG
AAAAAGCCAAGCAAAGGATAGCCGATCGGCGAGAGCGAAGAGATATTGAAGCCACTATTCAAGCCAATCGGCAAACCGTT
CATGAAGAAAAAGCTAAGCTAGATCAACTCTCTGTTGGGCCGATTCTAACCAATATAGATCGGCTTGAGGCTCGAAGGAT
AGATCTCATAGCTCAACTGGAGGAATGCAATGCCGAACTGGCTCTTGAGCAGAAGAAGCTAGCCGATCTCCCAAAGGCTG
TTGAGGAGCAGAAATCGAGACTCAAATCGGCTATCAGGAACGTGGCCGATTTGACTAAGTCTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17213.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis