Browse Element(s) Details


Os.9391.1.S1_at

Description gb:AK106935.1
DB_XREF= gi:32992144
TID=Os.9391.1
CNT=14
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.9391 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-119-C07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-119-C07, full insert sequence.
FL= gb:AK106935.1 gb:AK072407.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2869011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g28630OsAffx.22699.1.S1_x_at2/118+17357764..17363983retrotransposon protein, putative, unclassified
LOC_Os08g28630OsAffx.16111.1.S1_at1/118+17357764..17363983retrotransposon protein, putative, unclassified
LOC_Os08g28640OsAffx.17213.1.S1_x_at11/118+17364476..17366727hypothetical protein
LOC_Os08g28650OsAffx.29404.1.S1_at9/118+17367614..17369285hypothetical protein
LOC_Os08g28660OsAffx.5968.1.S1_at11/118+17373312..17374386hypothetical protein
LOC_Os08g28670Os.51490.1.S1_at11/118+17377243..17378834ripening induced protein, putative, expressed
LOC_Os08g28670Os.9301.1.S1_at10/118+17377243..17378834ripening induced protein, putative, expressed
LOC_Os08g28670Os.9301.1.S1_x_at8/118+17377243..17378834ripening induced protein, putative, expressed
LOC_Os08g28680Os.10883.1.S1_at11/118+17380193..17383258Ubiquitin-conjugating enzyme E2 M, putative, expressed
LOC_Os08g28690Os.9391.1.S1_at11/118+17385534..17390235expressed protein
LOC_Os08g28690Os.48160.1.A1_s_at11/118+17385534..17390235expressed protein
LOC_Os08g28690Os.9391.1.S2_at11/118+17385534..17390235expressed protein
LOC_Os08g28700OsAffx.5969.1.S1_at10/118+17405588..17408068DnaJ domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9391.1.S1_at--428--4371Chr08:17388523..17388547 (25 bp)
CCACTATTGGTGTTCGGTTGGTATA
LOC_Os08g28690
Os.9391.1.S1_at--323--2291Chr08:17388359..17388383 (25 bp)
AAATGTCATCACTCATCACAAGCAT
LOC_Os08g28690
Os.9391.1.S1_at--58--4952Chr10:20930570..20930594 (23 bp)
GCATTGAGCATTTTGCCTTTTTCTT
NONE
Os.9391.1.S1_at--94--10311Chr08:17388314..17388338 (25 bp)
TTTCTGGCTGTGCTGGTCAAGTTTA
LOC_Os08g28690
Os.9391.1.S1_at--459--971Chr08:17388278..17388302 (25 bp)
AGGACCTTGGCATACATCAGTTATT
LOC_Os08g28690
Os.9391.1.S1_at--502--7651Chr08:17388192..17388216 (25 bp)
GGGAGGTCAGCCAAAACTCTTTGTG
LOC_Os08g28690
Os.9391.1.S1_at--836--7671Chr08:17388166..17388190 (25 bp)
GGGTTCATTATTCTCACTTGTTTGG
LOC_Os08g28690
Os.9391.1.S1_at--156--10811Chr08:17388149..17388173 (25 bp)
TTGTTTGGTGATCTCTAGCATCTCC
LOC_Os08g28690
Os.9391.1.S1_at--768--9611Chr08:17388114..17388138 (25 bp)
TCATCCCCGATACTGGTTATGGATT
LOC_Os08g28690
Os.9391.1.S1_at--829--5271Chr08:17388075..17388099 (25 bp)
GAATGACTTTCAACTATGCGCTGCA
LOC_Os08g28690
Os.9391.1.S1_at--929--10131Chr08:17388061..17388085 (25 bp)
TATGCGCTGCATGGTGTGGATCAAT
LOC_Os08g28690
Target Sequence 
CCACTATTGGTGTTCGGTTGGTATAAAGCACATGCAAGTTTAAAGTTCAACAGACACTCTTGGGGTATATGGCCTATTTT
TTGGTTGAACTGATAGAAACATAATGGATATGAGTTGGAGTAAGCTGATCAGATCATACTGGGTTGAACTTGATTTGTAT
GCCAAAATGTCATCACTCATCACAAGCATTGAGCATTTTGCCTTTTTCTTTTCTGGCTGTGCTGGTCAAGTTTATGGAAT
TTGAAAGGACCTTGGCATACATCAGTTATTGCCTGGCAATCAATATGGCAAATTTTTGATGTATTTATGGCAGCTGGGTG
ACTGCTGCTTGGGGAGGTCAGCCAAAACTCTTTGTGAGGGTTCATTATTCTCACTTGTTTGGTGATCTCTAGCATCTCCC
CATAGCTGTTCATCCCCGATACTGGTTATGGATTGATATGCTGANGTTGAATGACTTTCAACTATGCGCTGCATGGTGTG
GATCAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9391.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis