Browse Element(s) Details


Os.48160.1.A1_s_at

Description gb:CR278593
DB_XREF= gi:44665159
DB_XREF=CR278593
CLONE=p773e02p3
TID=Os.48160.1
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.48160 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2869011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g28630OsAffx.22699.1.S1_x_at2/118+17357764..17363983retrotransposon protein, putative, unclassified
LOC_Os08g28630OsAffx.16111.1.S1_at1/118+17357764..17363983retrotransposon protein, putative, unclassified
LOC_Os08g28640OsAffx.17213.1.S1_x_at11/118+17364476..17366727hypothetical protein
LOC_Os08g28650OsAffx.29404.1.S1_at9/118+17367614..17369285hypothetical protein
LOC_Os08g28660OsAffx.5968.1.S1_at11/118+17373312..17374386hypothetical protein
LOC_Os08g28670Os.51490.1.S1_at11/118+17377243..17378834ripening induced protein, putative, expressed
LOC_Os08g28670Os.9301.1.S1_at10/118+17377243..17378834ripening induced protein, putative, expressed
LOC_Os08g28670Os.9301.1.S1_x_at8/118+17377243..17378834ripening induced protein, putative, expressed
LOC_Os08g28680Os.10883.1.S1_at11/118+17380193..17383258Ubiquitin-conjugating enzyme E2 M, putative, expressed
LOC_Os08g28690Os.9391.1.S1_at11/118+17385534..17390235expressed protein
LOC_Os08g28690Os.48160.1.A1_s_at11/118+17385534..17390235expressed protein
LOC_Os08g28690Os.9391.1.S2_at11/118+17385534..17390235expressed protein
LOC_Os08g28700OsAffx.5969.1.S1_at10/118+17405588..17408068DnaJ domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.48160.1.A1_s_at--814--6051Chr08:17385927..17385951 (25 bp)
GAGTTCAACCACATCAAATGTCCTT
LOC_Os08g28690
Os.48160.1.A1_s_at--1119--3531Chr08:17385916..17385940 (25 bp)
CATCAAATGTCCTTCATGGGAGCAT
LOC_Os08g28690
Os.48160.1.A1_s_at--794--10511Chr08:17385885..17385909 (25 bp)
TTCACTGGTTTCTTGGGTGGGAGAA
LOC_Os08g28690
Os.48160.1.A1_s_at--475--10331Chr08:17385876..17385900 (25 bp)
TTCTTGGGTGGGAGAAGAACCCCTG
LOC_Os08g28690
Os.48160.1.A1_s_at--279--5431Chr08:17385860..17385884 (25 bp)
GAACCCCTGGAATGCTAACTTGGCT
LOC_Os08g28690
Os.48160.1.A1_s_at--663--611Chr08:17385849..17385873 (25 bp)
ATGCTAACTTGGCTTCTTTGTTCCC
LOC_Os08g28690
Os.48160.1.A1_s_at--917--10551Chr08:17385836..17385860 (25 bp)
TTCTTTGTTCCCTTGTATTGTTAGG
LOC_Os08g28690
Os.48160.1.A1_s_at--825--8751Chr08:17385823..17385847 (25 bp)
TGTATTGTTAGGAGAGTCGCGGACA
LOC_Os08g28690
Os.48160.1.A1_s_at--862--1471Chr08:17385799..17385823 (25 bp)
AGAATCTTACTGAAGTCTGTATGCA
LOC_Os08g28690
Os.48160.1.A1_s_at--49--7191Chr08:17385785..17385809 (25 bp)
GTCTGTATGCAGTTTTTCTGGTTTC
LOC_Os08g28690
Os.48160.1.A1_s_at--525--5031Chr08:17385777..17385801 (25 bp)
GCAGTTTTTCTGGTTTCCTATTTCT
LOC_Os08g28690
Target Sequence 
GAGTTCAACCACATCAAATGTCCTTCATGGGAGCATTTTCAGTTCACTGGTTTCTTGGGTGGGAGAAGAACCCCTGGAAT
GCTAACTTGGCTTCTTTGTTCCCTTGTATTGTTAGGAGAGTCGCGGACAAGAATCTTACTGAAGTCTGTATGCAGTTTTT
CTGGTTTCCTATTTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.48160.1.A1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis