Browse Element(s) Details


Os.10883.1.S1_at

Description gb:AK070541.1
DB_XREF= gi:32980565
TID=Os.10883.1
CNT=22
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.10883 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-302-H10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023056A05, full insert sequence.
FL= gb:AK070541.1 gb:AK104158.1 gb:AK104511.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2868011/11Ubiquitin-conjugating enzyme E2 M, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g28630OsAffx.22699.1.S1_x_at2/118+17357764..17363983retrotransposon protein, putative, unclassified
LOC_Os08g28630OsAffx.16111.1.S1_at1/118+17357764..17363983retrotransposon protein, putative, unclassified
LOC_Os08g28640OsAffx.17213.1.S1_x_at11/118+17364476..17366727hypothetical protein
LOC_Os08g28650OsAffx.29404.1.S1_at9/118+17367614..17369285hypothetical protein
LOC_Os08g28660OsAffx.5968.1.S1_at11/118+17373312..17374386hypothetical protein
LOC_Os08g28670Os.51490.1.S1_at11/118+17377243..17378834ripening induced protein, putative, expressed
LOC_Os08g28670Os.9301.1.S1_at10/118+17377243..17378834ripening induced protein, putative, expressed
LOC_Os08g28670Os.9301.1.S1_x_at8/118+17377243..17378834ripening induced protein, putative, expressed
LOC_Os08g28680Os.10883.1.S1_at11/118+17380193..17383258Ubiquitin-conjugating enzyme E2 M, putative, expressed
LOC_Os08g28690Os.9391.1.S1_at11/118+17385534..17390235expressed protein
LOC_Os08g28690Os.48160.1.A1_s_at11/118+17385534..17390235expressed protein
LOC_Os08g28690Os.9391.1.S2_at11/118+17385534..17390235expressed protein
LOC_Os08g28700OsAffx.5969.1.S1_at10/118+17405588..17408068DnaJ domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0009733biological_processresponse to auxin stimulus
GO:0009790biological_processembryonic development
GO:0004840molecular_functionubiquitin conjugating enzyme activity
GO:0008640molecular_functionubiquitin-like conjugating enzyme activity
GO:0016976molecular_functionNEDD8 conjugating enzyme activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10883.1.S1_at--762--5051Chr08:17380763..17380787 (25 bp)
GCAGCAGTTCTTCGAGACAACCCAG
LOC_Os08g28680
Os.10883.1.S1_at--350--6211Chr08:17380702..17380726 (25 bp)
GAGGCTATGTTGGTGAAACCCACTT
LOC_Os08g28680
Os.10883.1.S1_at--464--2371Chr08:17380687..17380711 (25 bp)
AAACCCACTTCCCTAGATGTATGTA
LOC_Os08g28680
Os.10883.1.S1_at--934--6251Chr08:17380653..17380677 (25 bp)
GATGGTGATCGGTACCTGACTTATC
LOC_Os08g28680
Os.10883.1.S1_at--287--3591Chr08:17380619..17380643 (25 bp)
CATTTCTCCTACCAATGCACTATGG
LOC_Os08g28680
Os.10883.1.S1_at--511--8971Chr08:17380512..17380536 (25 bp)
TGAACTCACGTTCATAACCCGCAAT
LOC_Os08g28680
Os.10883.1.S1_at--461--531Chr08:17380489..17380513 (25 bp)
ATCCGAAGACTCTGGGTTAACCTGT
LOC_Os08g28680
Os.10883.1.S1_at--1132--2611Chr08:17380471..17380495 (25 bp)
AACCTGTTGTGGCAAATGTTCTCTT
LOC_Os08g28680
Os.10883.1.S1_at--1023--8691Chr08:17380351..17380375 (25 bp)
TGTGCTGCACTTACTGCCTGTTATG
LOC_Os08g28680
Os.10883.1.S1_at--521--6711Chr08:17380250..17380274 (25 bp)
GTTCTTTTTTCCAAGCTCTGTAACT
LOC_Os08g28680
Os.10883.1.S1_at--178--7151Chr08:17380219..17380243 (25 bp)
GTCTTCTCCACCTAAATGTTCTGAA
LOC_Os08g28680
Target Sequence 
GCAGCAGTTCTTCGAGACAACCCAGAAAAGTTTGAGAGAAATGTCCAGAGGGCAATGGCTGGAGGCTATGTTGGTGAAAC
CCACTTCCCTAGATGTATGTAAGGCCTGAAGATGGTGATCGGTACCTGACTTATCTGCTGCTGCCATTTCTCCTACCAAT
GCACTATGGTAAAAGCAGTATATGTAACCAAGAAGGAACTTCTCTGTTATGTAACAACAGCAGTTGCTAGAAAGTAAGTT
AGTGAGGCAATTGAACTCACGTTCATAACCCGCAATCCGAAGACTCTGGGTTAACCTGTTGTGGCAAATGTTCTCTTTTG
GCCCTCGCGCGCATCTCAGTCATTCTGATTCATACCAGTTTCTGAGATGCTTTTGTATAATGCCAGCTAGAGAAAATGCT
GAACAGTATGTGTGTGCTGCACTTACTGCCTGTTATGACTTATGGCTACCAGGAAGTAAGAACAAGTTCACTAACATTGC
TTAATGTAACATGCTACCTTGGGTAGTTGTGTTGTTCTTTTTTCCAAGCTCTGTAACTGGAAANGTCTTCTCCACCTAAA
TGTTCTGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10883.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis