Browse Element(s) Details


OsAffx.29457.1.S1_at

Description tigr:9636.m03158
TID=OsAffx.29457.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3160011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g31569Os.50979.1.S1_at10/118+19399320..19400307expressed protein
LOC_Os08g31580Os.5599.1.S1_x_at11/118+19414486..19416168DRE binding factor 1, putative, expressed
LOC_Os08g31580Os.5599.1.S1_at11/118+19414486..19416168DRE binding factor 1, putative, expressed
LOC_Os08g31590NANA8+19418166..19418456hypothetical protein
LOC_Os08g31600OsAffx.29457.1.S1_at11/118+19423320..19424178hypothetical protein
LOC_Os08g31610NANA8+19426268..19427632hypothetical protein
LOC_Os08g31620OsAffx.5998.1.S1_at11/118+19442053..19443258hypothetical protein
LOC_Os08g31630Os.12099.1.S1_s_at11/118+19446076..19450528trehalose-phosphatase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29457.1.S1_at--1--10711Chr08:19423374..19423398 (25 bp)
TTGCCTGACCATAACCCAACTGCAG
LOC_Os08g31600
OsAffx.29457.1.S1_at--275--351Chr08:19423384..19423408 (25 bp)
ATAACCCAACTGCAGCCGAGTCGAG
LOC_Os08g31600
OsAffx.29457.1.S1_at--131--1671Chr08:19423397..19423421 (25 bp)
AGCCGAGTCGAGTTTCCGCCTGTCA
LOC_Os08g31600
OsAffx.29457.1.S1_at--64--1671Chr08:19423546..19423570 (25 bp)
AGCCCATTGGCGGTGTGGATCTAGT
LOC_Os08g31600
OsAffx.29457.1.S1_at--441--451Chr08:19423564..19423588 (25 bp)
ATCTAGTCGACAGAGGCGAGCTCCT
LOC_Os08g31600
OsAffx.29457.1.S1_at--21--4091Chr08:19423580..19423604 (25 bp)
CGAGCTCCTCGCGAAGAGAGTGTTG
LOC_Os08g31600
OsAffx.29457.1.S1_at--191--2891Chr08:19423610..19423634 (25 bp)
AAGGGACGGCGATAGACTTGCAGAT
LOC_Os08g31600
OsAffx.29457.1.S1_at--325--291Chr08:19423621..19423645 (25 bp)
ATAGACTTGCAGATGCCGTCGGAGC
LOC_Os08g31600
OsAffx.29457.1.S1_at--37--1291Chr08:19423631..19423655 (25 bp)
AGATGCCGTCGGAGCGGACGTATCC
LOC_Os08g31600
OsAffx.29457.1.S1_at--372--7331Chr08:19423700..19424139 (25 bp)
GTGCAGAAAAATCGCGTCCAGGGAT
LOC_Os08g31600
OsAffx.29457.1.S1_at--268--2271Chr08:19423708..19424147 (25 bp)
AAATCGCGTCCAGGGATGAATTTCA
LOC_Os08g31600
Target Sequence 
TTGCCTGACCATAACCCAACTGCAGCCGAGTCGAGTTTCCGCCTGTCAACCACCCGTCGGATCCCTCCCCGTCACTGTCC
CTATTGCGCTCCCATGCACCTACAGCACGACGACAACCGGGGCGCGGGGCCACATGGCGCGAGCGGCAGTGACTGGCGGC
GGCGTGGAGGCGAGCCCATTGGCGGTGTGGATCTAGTCGACAGAGGCGAGCTCCTCGCGAAGAGAGTGTTGGTTGTAAGG
GACGGCGATAGACTTGCAGATGCCGTCGGAGCGGACGTATCCGAAGGGGACGCGAAGCGGGAGCCCGCCGGGGAGGATGC
AGCTGGGTGCAGAAAAATCGCGTCCAGGGATGAATTTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29457.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis