Browse Element(s) Details


OsAffx.29487.1.S1_at

Description tigr:9636.m03333
TID=OsAffx.29487.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3329011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g33250OsAffx.1647.1.S1_at1/118+20583209..20586101retrotransposon protein, putative, unclassified
LOC_Os08g33260OsAffx.29486.4.S1_at10/118+20587563..20589583hypothetical protein
LOC_Os08g33260OsAffx.29486.2.S1_x_at1/118+20587563..20589583hypothetical protein
LOC_Os08g33270OsAffx.29607.3.S1_x_at11/118+20595820..20602230transposon protein, putative, unclassified
LOC_Os08g33270OsAffx.29607.5.S1_x_at8/118+20595820..20602230transposon protein, putative, unclassified
LOC_Os08g33270OsAffx.29607.1.S1_x_at7/118+20595820..20602230transposon protein, putative, unclassified
LOC_Os08g33270OsAffx.29607.2.S1_s_at3/118+20595820..20602230transposon protein, putative, unclassified
LOC_Os08g33280NANA8+20602472..20608388Ulp1 protease family, C-terminal catalytic domain containing protein
LOC_Os08g33290OsAffx.29487.1.S1_at11/118+20610596..20612662hypothetical protein
LOC_Os08g33300OsAffx.29488.1.S1_x_at11/118+20628692..20631011Cytochrome P450 family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29487.1.S1_at--714--10412Chr08:20611850..20611874 (25 bp)
TTATTTTTGCATGCGTCCCCTTAAG
LOC_Os08g33290
OsAffx.29487.1.S1_at--749--4291Chr08:20611868..20611892 (25 bp)
CCTTAAGAGGTCCACCTACGAGAAT
LOC_Os08g33290
OsAffx.29487.1.S1_at--92--4371Chr08:20612181..20612205 (25 bp)
CCAACCTAAGGAACAGTGACGGCAG
LOC_Os08g33290
OsAffx.29487.1.S1_at--298--6951Chr08:20612232..20612256 (25 bp)
GTAGATCCGCCGTGCACAGATCGAG
LOC_Os08g33290
OsAffx.29487.1.S1_at--985--6671Chr08:20612310..20612334 (25 bp)
GTTGCCCTTGTCCATCGGAGCAACG
LOC_Os08g33290
OsAffx.29487.1.S1_at--240--4551Chr08:20612359..20612383 (25 bp)
GCCCTCAGGAGCTACGGTGGAAGCA
LOC_Os08g33290
OsAffx.29487.1.S1_at--1062--9131Chr08:20612437..20612461 (25 bp)
TGCGGTGCAGGGATATGCTGCCCTT
LOC_Os08g33290
OsAffx.29487.1.S1_at--664--671Chr08:20612538..20612562 (25 bp)
ATGACAATGACGGTAACAGCTGCAC
LOC_Os08g33290
OsAffx.29487.1.S1_at--883--7031Chr08:20612550..20612574 (25 bp)
GTAACAGCTGCACGATGACGATGGC
LOC_Os08g33290
OsAffx.29487.1.S1_at--466--6231Chr08:20612569..20612593 (25 bp)
GATGGCAGTGATGGCTGCTCCAACA
LOC_Os08g33290
OsAffx.29487.1.S1_at--637--9091Chr08:20612584..20612608 (25 bp)
TGCTCCAACAACACTGGTGGTGGTG
LOC_Os08g33290
Target Sequence 
TTATTTTTGCATGCGTCCCCTTAAGAGGTCCACCTACGAGAATAGGTGGCGTGGAGACGGTGGCCACAGGGGCGGGCGGG
CGCTGGCGTGCGGATCCACTGCTCCCAACCTAAGGAACAGTGACGGCAGGAGCGAGCGGCCACAGCGACCGGCTGGTAGA
TCCGCCGTGCACAGATCGAGGCGCCACCCCCATCCTCGGGAGCGAGCGGCCACGACAGCTGGCGGGCGGATCCGTTGCCC
TTGTCCATCGGAGCAACGCCGGTGGGCGGATCCGCCACTCCCGCCCTCAGGAGCTACGGTGGAAGCAAACGGTCACGGTG
ACCAGCAGGAGAATTCGCCGCCCCCGCCATCAGGAGCGACTGCGGTGCAGGGATATGCTGCCCTTGTCCTCGGGAGCAGC
GGGCTCAGGCAGTGGGACGGGAGCAGGGGCGACGATGATGGCAGTGATGGAGGCTGCGATGATGACAATGACGGTAACAG
CTGCACGATGACGATGGCAGTGATGGCTGCTCCAACAACACTGGTGGTGGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29487.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis