Browse Element(s) Details


OsAffx.29501.1.S1_at

Description tigr:9636.m03415
TID=OsAffx.29501.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Phosphofructokinase, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3405011/11phosphofructokinase family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g34000NANA8+21168747..21169358glycosyl transferase family 1 protein, putative
LOC_Os08g34010OsAffx.29500.1.S1_at10/118+21174650..21176207ZF-HD protein dimerisation region containing protein, expressed
LOC_Os08g34010Os.6873.1.S1_at10/118+21174650..21176207ZF-HD protein dimerisation region containing protein, expressed
LOC_Os08g34010OsAffx.29500.1.S1_x_at10/118+21174650..21176207ZF-HD protein dimerisation region containing protein, expressed
LOC_Os08g34020Os.15004.1.S1_at11/118+21181776..21184818exostosin family protein, putative, expressed
LOC_Os08g34030OsAffx.17322.1.S1_at11/118+21184788..21185574hypothetical protein
LOC_Os08g34040OsAffx.17323.1.S1_at10/118+21189225..21190083expressed protein
LOC_Os08g34050OsAffx.29501.1.S1_at11/118+21192127..21196463phosphofructokinase family protein, putative, expressed
LOC_Os08g34060Os.5676.1.S2_at11/118+21204797..21221734expressed protein
LOC_Os08g34060Os.5676.1.S1_at11/118+21204797..21221734expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006096biological_processglycolysis
GO:0005945cellular_component6-phosphofructokinase complex
GO:0003872molecular_function6-phosphofructokinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29501.1.S1_at--646--5031Chr08:21193475..21193499 (25 bp)
GCAGTTCCAAAGACCATCGACAATG
LOC_Os08g34050
OsAffx.29501.1.S1_at--77--2411Chr08:21193432..21193456 (25 bp)
AAACATTTGGTTTCGATACGGCTGT
LOC_Os08g34050
OsAffx.29501.1.S1_at--426--8811Chr08:21193410..21193434 (25 bp)
TGTTGAAGAAGCTCAGCGGGCCATT
LOC_Os08g34050
OsAffx.29501.1.S1_at--329--4671Chr08:21193395..21193419 (25 bp)
GCGGGCCATTAATTCTGCATATATA
LOC_Os08g34050
OsAffx.29501.1.S1_at--43--271Chr08:21193075..21193095 (21 bp)
ATAGAGGTTCCTTTCACGCTTGATG
LOC_Os08g34050
OsAffx.29501.1.S1_at--753--8791Chr08:21193040..21193064 (25 bp)
TGTTCTACGACACCTTGAGCATTTG
LOC_Os08g34050
OsAffx.29501.1.S1_at--389--2911Chr08:21193005..21193029 (25 bp)
AAGGATTCTGTGTTGTTTGTGTTGC
LOC_Os08g34050
OsAffx.29501.1.S1_at--1--1131Chr08:21192800..21192824 (25 bp)
AGTGACATCGGTGTTCATATGCAAC
LOC_Os08g34050
OsAffx.29501.1.S1_at--675--8271Chr08:21192450..21192474 (25 bp)
GGCATGTCGTGCCAATGCATCTGAT
LOC_Os08g34050
OsAffx.29501.1.S1_at--358--7531Chr08:21192245..21192269 (25 bp)
GTGGCATCACTTCTTGCATCTGCAA
LOC_Os08g34050
OsAffx.29501.1.S1_at--354--9951Chr08:21192179..21192203 (25 bp)
TACCGAAGCGCGTGAACCCTAATAG
LOC_Os08g34050
Target Sequence 
GCAGTTCCAAAGACCATCGACAATGATATACTTTTGATGGACAAAACATTTGGTTTCGATACGGCTGTTGAAGAAGCTCA
GCGGGCCATTAATTCTGCATATATAGAGGTTCCTTTCACGCTTGATGGAGAATATGGTGTTCTACGACACCTTGAGCATT
TGTTAAAGACCAAAGGATTCTGTGTTGTTTGTGTTGCTGAAGCTGCAGGACAAATACAGCTGGAAGCACGTGCAACAGAT
GCATCTGGAAATGTGATACTTAGTGACATCGGTGTTCATATGCAACAGAAGATTAAGATGCATTTCAAGGACATTGGTGT
TCCTGCTGATGTAAAATACATTGATCCGACATATATGGTTCGGGCATGTCGTGCCAATGCATCTGATGCAATTTTGTGCA
CTGTACTTGGACAAAATGCTGTCCATGGAGCATTTGCTGGGTTCAGTGGCATCACTTCTTGCATCTGCAACACGCACTAC
GTCTACCTCCCCATCACAGAAGTCATAACAGTACCGAAGCGCGTGAACCCTAATAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29501.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis