Browse Element(s) Details


OsAffx.2955.1.S1_at

Description tigr:9630.m04278
TID=OsAffx.2955.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4421011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g44160NANA2+26730662..26731855hypothetical protein
LOC_Os02g44170NANA2+26732274..26732945retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g44180Os.38751.1.A1_at5/112+26735523..26740760retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g44180OsAffx.27810.1.S1_x_at1/112+26735523..26740760retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g44180OsAffx.8338.1.S1_x_at1/112+26735523..26740760retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g44190OsAffx.22385.1.S1_x_at6/112+26741831..26744252retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g44190OsAffx.20329.1.S1_at3/112+26741831..26744252retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g44200OsAffx.24719.1.S1_at11/112+26749058..26751276thioesterase family protein
LOC_Os02g44210OsAffx.2955.1.S1_at11/112+26754041..26754565hypothetical protein
LOC_Os02g44220Os.5452.1.A1_s_at11/112+26756776..26760516Pex19 protein family protein, expressed
LOC_Os02g44230Os.6092.1.S1_at11/112+26761738..26765754trehalose-phosphatase family protein, expressed
LOC_Os02g44240OsAffx.12489.1.S1_at10/112+26766757..26767769hypothetical protein
LOC_Os02g44250Os.54704.1.S1_at10/112+26773435..26774394expressed protein
LOC_Os02g44260OsAffx.12490.1.S1_at10/112+26775727..26776764zinc-binding protein, putative
LOC_Os02g44260OsAffx.21876.1.S1_at1/112+26775727..26776764zinc-binding protein, putative
LOC_Os02g44270Os.52516.2.S1_x_at11/112+26778665..26782123expressed protein
LOC_Os02g44270Os.52516.1.S1_x_at9/112+26778665..26782123expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2955.1.S1_at--247--4031Chr02:26754147..26754171 (25 bp)
CGTCAGCTGTTGTCGTCGCCCGCGT
LOC_Os02g44210
OsAffx.2955.1.S1_at--660--8411Chr02:26754173..26754197 (25 bp)
GGCCCTCTATCGTCAATCGTGCTAG
LOC_Os02g44210
OsAffx.2955.1.S1_at--596--10151Chr02:26754180..26754204 (25 bp)
TATCGTCAATCGTGCTAGCCAGCTG
LOC_Os02g44210
OsAffx.2955.1.S1_at--893--8431Chr02:26754229..26754253 (25 bp)
GGCCAGCCGGTATGCTACCGCTCGA
LOC_Os02g44210
OsAffx.2955.1.S1_at--1029--1671Chr02:26754233..26754257 (25 bp)
AGCCGGTATGCTACCGCTCGAACCT
LOC_Os02g44210
OsAffx.2955.1.S1_at--45--4151Chr02:26754340..26754364 (25 bp)
CGCGGCCAACACCAGATCTAGTGGG
LOC_Os02g44210
OsAffx.2955.1.S1_at--581--2191Chr02:26754369..26754393 (25 bp)
ACAAATACGACGATGGCGGATCCGC
LOC_Os02g44210
OsAffx.2955.1.S1_at--201--3811Chr02:26754441..26754465 (25 bp)
CTCCTCATGCCGAGGGCGGGCTGCA
LOC_Os02g44210
OsAffx.2955.1.S1_at--155--9671Chr02:26754487..26754511 (25 bp)
TCACTATCCCGGCAGCCGTGTAGAT
LOC_Os02g44210
OsAffx.2955.1.S1_at--62--551Chr02:26754492..26754516 (25 bp)
ATCCCGGCAGCCGTGTAGATTTCGG
LOC_Os02g44210
OsAffx.2955.1.S1_at--122--4491Chr02:26754501..26754525 (25 bp)
GCCGTGTAGATTTCGGCGACAGCGA
LOC_Os02g44210
Target Sequence 
CGTCAGCTGTTGTCGTCGCCCGCGTCGGCCCTCTATCGTCAATCGTGCTAGCCAGCTGCTGCTGTGGCCTGCGCCTCCCA
TCGGCCAGCCGGTATGCTACCGCTCGAACCTCCCACCGGCCGCAGCGTCCTCTCAACCTCCCGCCATCCCACCGCTGTCA
CTCGCGCGGACGCCTGCACCTCCAATCAAATCCCGCGGCCAACACCAGATCTAGTGGGGGAGACAAATACGACGATGGCG
GATCCGCAGCTTCACGCTACACCGTCACACAGCCTTCCCAGCACGTCGTGCCGCCTCCTCATGCCGAGGGCGGGCTGCAG
CTGGGGTTTTGGCTCCGCCGTCACTATCCCGGCAGCCGTGTAGATTTCGGCGACAGCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2955.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis