Browse Element(s) Details


OsAffx.29580.1.S1_at

Description tigr:9636.m03821
TID=OsAffx.29580.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3799011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g37970OsAffx.29578.1.S1_at11/118+23918865..23920364Myb-like DNA-binding domain containing protein, expressed
LOC_Os08g37970Os.57514.1.S1_x_at1/118+23918865..23920364Myb-like DNA-binding domain containing protein, expressed
LOC_Os08g37980Os.56292.1.S1_x_at3/118+23933894..23934957retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g37980Os.56292.1.S1_at1/118+23933894..23934957retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g37990OsAffx.29580.1.S1_at11/118+23940848..23941731expressed protein
LOC_Os08g38000NANA8+23943630..23943914hypothetical protein
LOC_Os08g38010Os.25042.2.S1_at11/118+23946780..23950148expressed protein
LOC_Os08g38010Os.25042.1.S1_x_at11/118+23946780..23950148expressed protein
LOC_Os08g38020Os.31548.1.S1_at10/118+23950258..23951892bZIP transcription factor family protein, expressed
LOC_Os08g38030OsAffx.17391.1.S1_at11/118+23958792..23961393hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29580.1.S1_at--1064--851Chr08:23941142..23941166 (25 bp)
ATGGCTATGGCTACATCAGCGGTCG
LOC_Os08g37990
OsAffx.29580.1.S1_at--152--2871Chr08:23941250..23941274 (25 bp)
AAGTGAAGGTGCCTTCCGCACCGGA
LOC_Os08g37990
OsAffx.29580.1.S1_at--1080--851Chr08:23941358..23941382 (25 bp)
ATGGCTTGCACACCAAATTCTCGAT
LOC_Os08g37990
OsAffx.29580.1.S1_at--124--3291Chr08:23941371..23941395 (25 bp)
CAAATTCTCGATGAGCTCCGGCAAG
LOC_Os08g37990
OsAffx.29580.1.S1_at--505--6571Chr08:23941478..23941502 (25 bp)
GATTCTTTTGGTAATGGCTTTCTAA
LOC_Os08g37990
OsAffx.29580.1.S1_at--77--9351Chr08:23941515..23941539 (25 bp)
TCGCTGTACTAGGAATCTCTCTTTT
LOC_Os08g37990
OsAffx.29580.1.S1_at--1109--8771Chr08:23941613..23941637 (25 bp)
TGTTTTTGCCTTCCATAGAGCTTCT
LOC_Os08g37990
OsAffx.29580.1.S1_at--378--10031Chr08:23941628..23941652 (25 bp)
TAGAGCTTCTCCCATGGTTGACCAC
LOC_Os08g37990
OsAffx.29580.1.S1_at--590--8571Chr08:23941642..23941666 (25 bp)
TGGTTGACCACCCAGTAGTAGGTTA
LOC_Os08g37990
OsAffx.29580.1.S1_at--598--6931Chr08:23941656..23941680 (25 bp)
GTAGTAGGTTAACTGTTGCCGCCAT
LOC_Os08g37990
OsAffx.29580.1.S1_at--224--6691Chr08:23941670..23941694 (25 bp)
GTTGCCGCCATGTAAATCTACTGTA
LOC_Os08g37990
Target Sequence 
ATGGCTATGGCTACATCAGCGGTCGGGGAAGCCGCAAGGAGTATGAAGACGACGGCGATGGCGACGACGACGATTCCCTC
GCCTCCGATGCTTCAACCGGTCCGGCCAAAGTGAAGGTGCCTTCCGCACCGGACGGCGATGACGCCGGCGGCCGTCGGAA
GCACGACGGCGACGAAGACGGCGGCGGCAAGGGGGAGGAGGAGGAGGAAGAAGATCATGGCTTGCACACCAAATTCTCGA
TGAGCTCCGGCAAGAAAGCCGGCAAGACGGAGAAAGGAGGAGAAGGGAAGTCCTCCAAGAAAGGCCAGAACAAGAGAGGA
AGCTCATCAAGAACAAGATTCTTTTGGTAATGGCTTTCTAAAATGCATTAGAATCGCTGTACTAGGAATCTCTCTTTTCA
GTTTCTTGGTAAGATTGAATCCTTGCTAGGAGTATGCATGCATGGAGAAAGGAAGGCTTTTTTTGGATCCTTGTTTTTGC
CTTCCATAGAGCTTCTCCCATGGTTGACCACCCAGTAGTAGGTTAACTGTTGCCGCCATGTAAATCTACTGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29580.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis