Browse Element(s) Details


OsAffx.29596.1.S1_s_at

Description tigr:9636.m03960
TID=OsAffx.29596.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Protein kinase domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3921011/11wall-associated kinase-like 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g39180Os.27559.1.S1_at1/118+24608961..24625646retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g39190Os.55530.1.S1_at11/118+24629487..24630070expressed protein
LOC_Os08g39200OsAffx.29595.1.S1_at11/118+24630813..24631235hypothetical protein
LOC_Os08g39210OsAffx.29596.1.S1_s_at11/118+24634500..24638047wall-associated kinase-like 1, putative, expressed
LOC_Os08g39220OsAffx.29597.1.S1_at11/118+24640118..24642902wall-associated kinase-like 1, putative
LOC_Os08g39230OsAffx.6081.1.S1_at11/118+24643979..24645776hypothetical protein
LOC_Os08g39240Os.27559.1.S1_at11/118+24647467..24653247wall-associated kinase-like 1, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0009826biological_processunidimensional cell growth
GO:0048527biological_processlateral root development
GO:0005886cellular_componentplasma membrane
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29596.1.S1_s_at--1124--8371Chr08:24635060..24635084 (25 bp)
GGCGATGCTCTTGTTTTACATTTTG
LOC_Os08g39210
OsAffx.29596.1.S1_s_at--166--2511Chr08:24635015..24635039 (25 bp)
AACTTGGTCGACATATTAGATCCTC
LOC_Os08g39210
OsAffx.29596.1.S1_s_at--995--2851Chr08:24634966..24634990 (25 bp)
AAGTCCAAGAAGTAGCTGCACTAGC
LOC_Os08g39210
OsAffx.29596.1.S1_s_at--612--6031Chr08:24634918..24634942 (25 bp)
GAGATGACCGGCCTACAATGAGAGA
LOC_Os08g39210
OsAffx.29596.1.S1_s_at--378--5391Chr08:24634857..24634881 (25 bp)
GAAGCATGCTACACTTGGTACAACA
LOC_Os08g39210
OsAffx.29596.1.S1_s_at--851--3111Chr08:24634737..24634761 (25 bp)
AATATTGTCGTCTGGTACCTATCCT
LOC_Os08g39210
OsAffx.29596.1.S1_s_at--27--6991Chr08:24634723..24634747 (25 bp)
GTACCTATCCTCGATGATGTTTGTC
LOC_Os08g39210
OsAffx.29596.1.S1_s_at--391--6271Chr08:24634708..24634732 (25 bp)
GATGTTTGTCTTTGGCCTGAACTAG
LOC_Os08g39210
OsAffx.29596.1.S1_s_at--316--7411Chr08:24634629..24634653 (25 bp)
GTGATCTTGCTTTATTGTTTTGGAA
LOC_Os08g39210
OsAffx.29596.1.S1_s_at--607--1471Chr08:24634600..24634624 (25 bp)
AGAATTGTTTCTATCCCGTCATAAA
LOC_Os08g39210
OsAffx.29596.1.S1_s_at--194--9151Chr08:24634587..24634611 (25 bp)
TCCCGTCATAAACAATTCCCGAAAT
LOC_Os08g39210
Target Sequence 
GGCGATGCTCTTGTTTTACATTTTGTTTCACTACATACAGAAAACAACTTGGTCGACATATTAGATCCTCAAGTCATGGA
AGAGGGAGATGGAGAAGTCCAAGAAGTAGCTGCACTAGCAGCAACGTGTATTAAATTGAAGGGAGATGACCGGCCTACAA
TGAGAGAAGTGGAGATGGCACTTGAAAATATACGAGTTAAGAAGAAGCATGCTACACTTGGTACAACATCAAATAGATGT
GATGGGGACCAAATTGTATGTGATTATTTGTCGACTAGAGGAATCACTGACGAATCAACAAGACAATACACTATGGAAGA
GGAAATATTGTCGTCTGGTACCTATCCTCGATGATGTTTGTCTTTGGCCTGAACTAGAATTGCTGTTTGTTATATGTACA
ACGTTTGTAAAGCATGTCAGTAGTGCAAGAAGTGATCTTGCTTTATTGTTTTGGAAATGAAGAATTGTTTCTATCCCGTC
ATAAACAATTCCCGAAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29596.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis