Browse Element(s) Details


OsAffx.29597.1.S1_at

Description tigr:9636.m03961
TID=OsAffx.29597.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Protein kinase domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3922011/11wall-associated kinase-like 1, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g39180Os.27559.1.S1_at1/118+24608961..24625646retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g39190Os.55530.1.S1_at11/118+24629487..24630070expressed protein
LOC_Os08g39200OsAffx.29595.1.S1_at11/118+24630813..24631235hypothetical protein
LOC_Os08g39210OsAffx.29596.1.S1_s_at11/118+24634500..24638047wall-associated kinase-like 1, putative, expressed
LOC_Os08g39220OsAffx.29597.1.S1_at11/118+24640118..24642902wall-associated kinase-like 1, putative
LOC_Os08g39230OsAffx.6081.1.S1_at11/118+24643979..24645776hypothetical protein
LOC_Os08g39240Os.27559.1.S1_at11/118+24647467..24653247wall-associated kinase-like 1, putative, expressed
LOC_Os08g39250Os.32331.1.S1_at11/118+24667734..24674195expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0009620biological_processresponse to fungi
GO:0009751biological_processresponse to salicylic acid stimulus
GO:0009826biological_processunidimensional cell growth
GO:0048527biological_processlateral root development
GO:0005618cellular_componentcell wall
GO:0005886cellular_componentplasma membrane
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29597.1.S1_at--912--1191Chr08:24642335..24642359 (25 bp)
AGTATCCGACTTCGGAGCTTCTCGA
LOC_Os08g39220
OsAffx.29597.1.S1_at--694--4891Chr08:24642351..24642375 (25 bp)
GCTTCTCGAGGTATCCCAATTGATC
LOC_Os08g39220
OsAffx.29597.1.S1_at--478--5531Chr08:24642384..24642408 (25 bp)
GTAACTACTACTATCCAGGGAACTT
LOC_Os08g39220
OsAffx.29597.1.S1_at--269--3691Chr08:24642473..24642497 (25 bp)
CTTTGGTGTCATACTTGCGGAGCTA
LOC_Os08g39220
OsAffx.29597.1.S1_at--658--5291Chr08:24642508..24642532 (25 bp)
GAAGGCCAACTTCCTACATATCACC
LOC_Os08g39220
OsAffx.29597.1.S1_at--1033--5271Chr08:24642534..24642558 (25 bp)
GAAGGCTTCAATCTAACCGAACAAT
LOC_Os08g39220
OsAffx.29597.1.S1_at--369--8751Chr08:24642740..24642764 (25 bp)
TGTAAACACTATCAGAGGTCGACGT
LOC_Os08g39220
OsAffx.29597.1.S1_at--646--3991Chr08:24642762..24642786 (25 bp)
CGTGCAGTTCAGTTGAATTCTCCAT
LOC_Os08g39220
OsAffx.29597.1.S1_at--322--6011Chr08:24642795..24642819 (25 bp)
GAGAGCGATTCCAACATCGTTGCTG
LOC_Os08g39220
OsAffx.29597.1.S1_at--248--2511Chr08:24642807..24642831 (25 bp)
AACATCGTTGCTGTTGGTGACGCTG
LOC_Os08g39220
OsAffx.29597.1.S1_at--1000--6771Chr08:24642832..24642856 (25 bp)
GTTATCACAACTCAAGCAGGCGGCT
LOC_Os08g39220
Target Sequence 
AGTATCCGACTTCGGAGCTTCTCGAGGTATCCCAATTGATCAAAATATTGTAACTACTACTATCCAGGGAACTTTTGGAT
ACTTAGATCCAGAGTACTACCGTAAAAGCCGACTTACGGAGAAAAGTGATGTATACAGCTTTGGTGTCATACTTGCGGAG
CTAATAACACGAAGAAGGCCAACTTCCTACATATCACCAGAAGGCTTCAATCTAACCGAACAATTTATCTTGCTAGTTAG
TGAGGACAGGCTCTTGGAAATAGTAGACAGTCAAATCACTAAGGAGCAGGGAGAAGAAGAAGCCAGAGAAGTGGCAGAAA
TTGCTGTTATGTGCTTAAACTTAAAGGGTGAAGACAGGCCGACAATGCGGCAGGTTGAGGTGAAACTTGAAGGGTTGCAG
GGTGCTGTAAACACTATCAGAGGTCGACGTGCAGTTCAGTTGAATTCTCCATTGACTGAAGAGAGCGATTCCAACATCGT
TGCTGTTGGTGACGCTGGTTATCACAACTCAAGCAGGCGGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29597.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis