Browse Element(s) Details


OsAffx.29598.1.S1_at

Description tigr:9636.m03974
TID=OsAffx.29598.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3934011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g39310Os.12517.1.A1_at11/118+24704847..24709249SWIB/MDM2 domain containing protein, expressed
LOC_Os08g39320OsAffx.17415.1.S1_at11/118+24710021..24711341hypothetical protein
LOC_Os08g39330Os.6423.1.S1_at11/118+24721442..24722816expressed protein
LOC_Os08g39330Os.26088.1.A1_x_at7/118+24721442..24722816expressed protein
LOC_Os08g39330Os.15871.1.A1_at2/118+24721442..24722816expressed protein
LOC_Os08g39340OsAffx.29598.1.S1_at11/118+24728294..24731473expressed protein
LOC_Os08g39350Os.9696.1.S1_at11/118+24733098..24739315Glycerophosphoryl diester phosphodiesterase family protein, expressed
LOC_Os08g39360OsAffx.6083.1.S1_at11/118+24745902..24747010hypothetical protein
LOC_Os08g39360OsAffx.24232.2.S1_s_at1/118+24745902..24747010hypothetical protein
LOC_Os08g39370Os.5210.1.S1_at11/118+24750412..24753503sodium/dicarboxylate cotransporter, putative, expressed
LOC_Os08g39380Os.21874.1.S1_at11/118+24754930..24759033beta-2-xylosyltransferase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29598.1.S1_at--656--551Chr08:24728532..24728556 (25 bp)
ATCCGTCACCGGCAACTGCAGGGAA
LOC_Os08g39340
OsAffx.29598.1.S1_at--321--1491Chr08:24730518..24730542 (25 bp)
AGCAAGCATTTCTCTATTAGGTGTG
LOC_Os08g39340
OsAffx.29598.1.S1_at--862--491Chr08:24730553..24730577 (25 bp)
ATCGTACCTCATATTATTTCCCAAA
LOC_Os08g39340
OsAffx.29598.1.S1_at--74--6531Chr08:24730697..24730721 (25 bp)
GATTTGTGTCCAACGACAGCGTGAT
LOC_Os08g39340
OsAffx.29598.1.S1_at--484--7551Chr08:24730729..24730753 (25 bp)
GTGGCGACTGCGACACTATGTTTAG
LOC_Os08g39340
OsAffx.29598.1.S1_at--1130--6071Chr08:24731250..24731274 (25 bp)
GAGTATTCTGGTTTGCTGCCGTATC
LOC_Os08g39340
OsAffx.29598.1.S1_at--26--9191Chr08:24731266..24731290 (25 bp)
TGCCGTATCTGCCATGGCGATTGAG
LOC_Os08g39340
OsAffx.29598.1.S1_at--794--5691Chr08:24731307..24731331 (25 bp)
GACTTCAGAGCCTCCGTATGATTGA
LOC_Os08g39340
OsAffx.29598.1.S1_at--1025--5251Chr08:24731366..24731390 (25 bp)
GAATCCGTCGCAGCTGATTGCGAAA
LOC_Os08g39340
OsAffx.29598.1.S1_at--234--4591Chr08:24731396..24731420 (25 bp)
GCGCACATCGCTTTACAAGTTTACA
LOC_Os08g39340
OsAffx.29598.1.S1_at--719--10331Chr08:24731415..24731439 (25 bp)
TTTACAGCTGCTTGGCACTATCTCA
LOC_Os08g39340
Target Sequence 
ATCCGTCACCGGCAACTGCAGGGAAGACGGCAGCGGGTCTCGGGCAAAGTGGCGACGACGATAGTGGTGACGGCGACGAC
GGTGGCAGTTTAAGCGCCCGCGTGCGGTACTGTAAGGAAGTGATAGCAAGCATTTCTCTATTAGGTGTGATATATTATTA
TCGTACCTCATATTATTTCCCAAAAAAGATCCATGTCAAGATTTGTGTCCAACGACAGCGTGATGATGGTGGTGGCGACT
GCGACACTATGTTTAGGGTCTATGTTTGGAGGACGGATGGAGTATTCTGGTTTGCTGCCGTATCTGCCATGGCGATTGAG
GTGATCGATCAGTTCAGACTTCAGAGCCTCCGTATGATTGACTGGATCACTGGATCCACTCCTCCACTTTTGCCCGAATC
CGTCGCAGCTGATTGCGAAACAGAAGCGCACATCGCTTTACAAGTTTACAGCTGCTTGGCACTATCTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29598.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis