Browse Element(s) Details


OsAffx.2960.1.S1_x_at

Description tigr:9630.m04352
TID=OsAffx.2960.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=protein kinase, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4492011/11Protein kinase APK1A, chloroplast precursor, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g44890Os.36087.1.A1_at11/112+27182151..27186029expressed protein
LOC_Os02g44890OsAffx.12500.1.S1_s_at11/112+27182151..27186029expressed protein
LOC_Os02g44890OsAffx.12500.1.S1_at10/112+27182151..27186029expressed protein
LOC_Os02g44900OsAffx.24732.1.S1_x_at11/112+27198671..27201866expressed protein
LOC_Os02g44900Os.24379.1.A1_at10/112+27198671..27201866expressed protein
LOC_Os02g44910Os.11855.1.S1_at8/112+27201920..27206769MAP kinase-activating protein C22orf5 homolog, putative, expressed
LOC_Os02g44920OsAffx.2960.1.S1_x_at11/112+27209372..27211850Protein kinase APK1A, chloroplast precursor, putative
LOC_Os02g44930Os.7523.1.S1_at11/112+27219411..27221344HMG1/2, putative, expressed
LOC_Os02g44940OsAffx.24733.1.S1_s_at11/112+27222966..27223758Rapid ALkalinization Factor family protein, expressed
LOC_Os02g44950NANA2+27226755..27227288transposon protein, putative, unclassified
LOC_Os02g44960Os.43567.1.S1_x_at1/112+27228929..27229624retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g44970NANA2+27232788..27234851hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2960.1.S1_x_at--752--9351Chr02:27209946..27210067 (25 bp)
TCGACACGCAATTCCACGCGAAGCT
LOC_Os02g44920
OsAffx.2960.1.S1_x_at--1098--3151Chr02:27209937..27209961 (25 bp)
AATTCCACGCGAAGCTCTCCGACTT
LOC_Os02g44920
OsAffx.2960.1.S1_x_at--323--1511Chr02:27209881..27209905 (25 bp)
AGCAGCCACGTGACGACCCGCGTGA
LOC_Os02g44920
OsAffx.2960.1.S1_x_at--385--8911Chr02:27209871..27209895 (25 bp)
TGACGACCCGCGTGATGGGCACCTA
LOC_Os02g44920
OsAffx.2960.1.S1_x_at--301--5731Chr02:27209819..27209843 (25 bp)
GACGGGCCACCTGTACGTGAAGAGC
LOC_Os02g44920
OsAffx.2960.1.S1_x_at--425--3371Chr02:27209710..27209734 (25 bp)
CACCTGGTGGACTGGGCCAAGCCAT
LOC_Os02g44920
OsAffx.2960.1.S1_x_at--677--91Chr02:27209687..27209711 (25 bp)
ATTCCTGTCCGACCGCCGGAAGCTG
LOC_Os02g44920
OsAffx.2960.1.S1_x_at--1129--4251Chr02:27209672..27209696 (25 bp)
CCGGAAGCTGGCTCGGCTCATGGAC
LOC_Os02g44920
OsAffx.2960.1.S1_x_at--591--2731Chr02:27209566..27209590 (25 bp)
AAGAACCGGCCCTCCATGAGGGAGG
LOC_Os02g44920
OsAffx.2960.1.S1_x_at--1026--4331Chr02:27209553..27209577 (25 bp)
CCATGAGGGAGGTCGTCGCCGTCCT
LOC_Os02g44920
OsAffx.2960.1.S1_x_at--1136--9371Chr02:27209529..27209553 (25 bp)
TCGAGGAGATCGAGTCCATGTCCAG
LOC_Os02g44920
Target Sequence 
TCGACACGCAATTCCACGCGAAGCTCTCCGACTTCGGGCTCGCCAAGGACGGGCCGGCCGGCGGCAGCAGCCACGTGACG
ACCCGCGTGATGGGCACCTACGGCTACGCGGCGCCGGAGTACGTGGCGACGGGCCACCTGTACGTGAAGAGCGACGTGTA
CGGCTTCGGCGTCGTGCTGCTGGAGCTCCTGACGGGGCTCCGCGCGCTCGACGCCGGGCGGCCCAGCGGGCAGCACCACC
TGGTGGACTGGGCCAAGCCATTCCTGTCCGACCGCCGGAAGCTGGCTCGGCTCATGGACCCGCGCCTCGAGGGGCAGTAC
TCGTCCAGGGGCGCGCAGCGTGCGGCGCAGCTCACGCTCCGGTGCCTCGCCGCCGACCACAAGAACCGGCCCTCCATGAG
GGAGGTCGTCGCCGTCCTCGAGGAGATCGAGTCCATGTCCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2960.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis