Browse Element(s) Details


OsAffx.29601.1.S1_at

Description tigr:9636.m04001
TID=OsAffx.29601.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=probable rRNA methylase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3960011/11RNA methyltransferase, TrmH family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g39580NANA8+24910422..24914534Tobamovirus movement protein containing protein
LOC_Os08g39590OsAffx.17422.1.S1_at11/118+24927945..24930448Leucine Rich Repeat family protein, expressed
LOC_Os08g39600OsAffx.29601.1.S1_at11/118+24931797..24934063RNA methyltransferase, TrmH family protein, expressed
LOC_Os08g39610OsAffx.14360.2.A1_at11/118+24935027..24935338hypothetical protein
LOC_Os08g39620OsAffx.22940.2.S1_s_at11/118+24937936..24943750transposon protein, putative, Mutator sub-class
LOC_Os08g39620OsAffx.22940.1.S1_s_at11/118+24937936..24943750transposon protein, putative, Mutator sub-class
LOC_Os08g39620OsAffx.22940.3.S1_x_at9/118+24937936..24943750transposon protein, putative, Mutator sub-class
LOC_Os08g39620OsAffx.22940.5.S1_x_at4/118+24937936..24943750transposon protein, putative, Mutator sub-class
LOC_Os08g39620OsAffx.22940.2.S1_at4/118+24937936..24943750transposon protein, putative, Mutator sub-class
LOC_Os08g39620OsAffx.22940.5.S1_at1/118+24937936..24943750transposon protein, putative, Mutator sub-class
LOC_Os08g39620OsAffx.31552.2.S1_at1/118+24937936..24943750transposon protein, putative, Mutator sub-class
LOC_Os08g39630Os.5311.1.S1_at10/118+24956680..24959677Helix-loop-helix DNA-binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006396biological_processRNA processing
GO:0003723molecular_functionRNA binding
GO:0008173molecular_functionRNA methyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29601.1.S1_at--920--9331Chr08:24933712..24933736 (25 bp)
TCGCGCGCGCCAAGAGGATGCTTCA
LOC_Os08g39600
OsAffx.29601.1.S1_at--1088--7971Chr08:24933697..24933721 (25 bp)
GGATGCTTCACGTGGTGCTGGTCTC
LOC_Os08g39600
OsAffx.29601.1.S1_at--74--9731Chr08:24932586..24932610 (25 bp)
TCAAGATTCATGACTCCTGGAACGA
LOC_Os08g39600
OsAffx.29601.1.S1_at--578--2571Chr08:24932566..24932590 (25 bp)
AACGAGTTCCGAGATTATTTCATGA
LOC_Os08g39600
OsAffx.29601.1.S1_at--100--6211Chr08:24932415..24932435 (21 bp)
GAGGCACGAGCATTCATTCAGATTT
LOC_Os08g39600
OsAffx.29601.1.S1_at--1119--2271Chr08:24932003..24932027 (25 bp)
AAAGGTTTACCACAATCTGCCCTTG
LOC_Os08g39600
OsAffx.29601.1.S1_at--313--3831Chr08:24931987..24932011 (25 bp)
CTGCCCTTGAGGACTGCTCTAGAGA
LOC_Os08g39600
OsAffx.29601.1.S1_at--488--8151Chr08:24931926..24931950 (25 bp)
GGAAACCTATGTCCGGTGCCTAAAT
LOC_Os08g39600
OsAffx.29601.1.S1_at--290--3071Chr08:24931904..24931928 (25 bp)
AATCTTTCTGTTAGCGTCGGAGTAG
LOC_Os08g39600
OsAffx.29601.1.S1_at--1161--1491Chr08:24931881..24931905 (25 bp)
AGCACTGTACGAGGCAGCTAGACAA
LOC_Os08g39600
OsAffx.29601.1.S1_at--709--671Chr08:24931849..24931873 (25 bp)
ATGAACAGCTCCATTATCAGCCGGA
LOC_Os08g39600
Target Sequence 
TCGCGCGCGCCAAGAGGATGCTTCACGTGGTGCTGGTCTCCCCTCTGATCCCGGGAAACACTGGATCGATTGCGAGGACA
TGTGCTGCGTCAGCAGTTGGGCTGCATCTTGTCGGGGTAAGATATGTTGTTGTCAAGATTCATGACTCCTGGAACGAGTT
CCGAGATTATTTCATGAAGCAGGATGGAGAAAAACGGTTACTGGCATTTACCAAAAGAGGCACGAGCATTCATTCAGATT
TCTCATATAAGCCTGGGGATTGGTTAGTATTTGGCTCTGAGACGAAAGGTTTACCACAATCTGCCCTTGAGGACTGCTCT
AGAGAAGGCCTAGGTGGTGGAACTATACGAATTCCAATGGTGGAAACCTATGTCCGGTGCCTAAATCTTTCTGTTAGCGT
CGGAGTAGCACTGTACGAGGCAGCTAGACAACTCAACTATGAACAGCTCCATTATCAGCCGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29601.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis