Browse Element(s) Details


OsAffx.29634.1.S1_at

Description tigr:9636.m04342
TID=OsAffx.29634.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4268011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g42650NANA8+26823701..26829200retrotransposon protein, putative, unclassified
LOC_Os08g42660NANA8+26830143..26833284retrotransposon protein, putative, unclassified
LOC_Os08g42670Os.38426.1.S1_at11/118+26835906..26845398Resistance protein, putative, expressed
LOC_Os08g42680OsAffx.29634.1.S1_at11/118+26848171..26849460hypothetical protein
LOC_Os08g42690Os.55763.1.S1_at4/118+26849865..26853609Ankyrin repeat domain protein 2, putative, expressed
LOC_Os08g42700Os.49225.1.S1_at11/118+26856821..26864804NB-ARC domain containing protein, expressed
LOC_Os08g42700Os.49225.1.S2_at11/118+26856821..26864804NB-ARC domain containing protein, expressed
LOC_Os08g42700OsAffx.10059.1.S1_at1/118+26856821..26864804NB-ARC domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29634.1.S1_at--156--6071Chr08:26848692..26848716 (25 bp)
GAGTTTCTCCCAGGAACTTTGGCTA
LOC_Os08g42680
OsAffx.29634.1.S1_at--415--2031Chr08:26848677..26848701 (25 bp)
ACTTTGGCTAAGTCGTTCCGTGATC
LOC_Os08g42680
OsAffx.29634.1.S1_at--145--5911Chr08:26848630..26848654 (25 bp)
GAGCTTCGTCGAGATGGAACACCGT
LOC_Os08g42680
OsAffx.29634.1.S1_at--1121--5491Chr08:26848614..26848638 (25 bp)
GAACACCGTGTGATCGTAACAACTG
LOC_Os08g42680
OsAffx.29634.1.S1_at--691--5411Chr08:26848588..26848612 (25 bp)
GAAGCCAAGTGATCCCAGCAAAATG
LOC_Os08g42680
OsAffx.29634.1.S1_at--788--6691Chr08:26848560..26848584 (25 bp)
GTTCTTTACGACACTGACCTGATAG
LOC_Os08g42680
OsAffx.29634.1.S1_at--730--10251Chr08:26848516..26848540 (25 bp)
TTTGAACAAGAAACCCCAGCAGCTG
LOC_Os08g42680
OsAffx.29634.1.S1_at--253--831Chr08:26848462..26848486 (25 bp)
ATGGAGTCGGCATGTTTCGTCCAAC
LOC_Os08g42680
OsAffx.29634.1.S1_at--1071--5191Chr08:26848372..26848396 (25 bp)
GAATTTAGCTTCTCCAACCCTGGGT
LOC_Os08g42680
OsAffx.29634.1.S1_at--109--8211Chr08:26848255..26848279 (25 bp)
GGCAATTGGACCGTATTCCTTTGAA
LOC_Os08g42680
OsAffx.29634.1.S1_at--1003--10311Chr08:26848204..26848228 (25 bp)
TTTCTCGACATGCTTATTGCCTCCA
LOC_Os08g42680
Target Sequence 
GAGTTTCTCCCAGGAACTTTGGCTAAGTCGTTCCGTGATCTCGTGTGCGTCGACGGTGTGATGAGCTTCGTCGAGATGGA
ACACCGTGTGATCGTAACAACTGAGAAGCCAAGTGATCCCAGCAAAATGCAAGTTCTTTACGACACTGACCTGATAGTGT
CATATAACCTCAAAGATTTGAACAAGAAACCCCAGCAGCTGCAGAGAAAGGATGGTTGGAGGATTGTGTCATGGAGTCGG
CATGTTTCGTCCAACTGTTGGGAAAAAGGTTGTGAGGTTGATGCTGTTGACATATCAGGGTTAAGTCCAAATCTTGCAGA
GAATTTAGCTTCTCCAACCCTGGGTGTGGATGATGGTGATGTTGTGTACATGAGATCTAAGGCTAGCTTGGGTAAGGGAA
AGATGGTAGCTATTGATCTTAGAAGGAAGAAAGTGAAGGCAATTGGACCGTATTCCTTTGAAAAGCATGATCCTTTTTCT
TTGAAAGCTTTCTCGACATGCTTATTGCCTCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29634.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis