Browse Element(s) Details


OsAffx.29659.2.S1_s_at

Description tigr:9636.m04535
TID=OsAffx.29659.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=S25 ribosomal protein, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4448010/1140S ribosomal protein S25, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g44420Os.48045.1.S1_at4/118+27810155..27815928125 kDa kinesin-related protein, putative, expressed
LOC_Os08g44430Os.10833.1.S1_at11/118+27823458..27826135synaptobrevin family protein, putative, expressed
LOC_Os08g44440Os.12998.1.S1_at11/118+27826616..27830199Multiple myeloma tumor-associated protein 2 homolog, putative, expressed
LOC_Os08g44450Os.12334.1.S1_x_at11/118+27830358..2783290060S ribosomal protein L10a-1, putative, expressed
LOC_Os08g44450Os.12334.2.S1_at5/118+27830358..2783290060S ribosomal protein L10a-1, putative, expressed
LOC_Os08g44460Os.12405.1.S1_at11/118+27833353..27835109expressed protein
LOC_Os08g44460OsAffx.17513.1.S1_at10/118+27833353..27835109expressed protein
LOC_Os08g44470OsAffx.6135.1.S1_s_at11/118+27835512..27837858expressed protein
LOC_Os08g44480Os.33777.1.S1_at11/118+27840180..2784186840S ribosomal protein S25, putative, expressed
LOC_Os08g44480OsAffx.29659.2.S1_s_at10/118+27840180..2784186840S ribosomal protein S25, putative, expressed
LOC_Os08g44490NANA8+27846694..27849986retrotransposon protein, putative, unclassified
LOC_Os08g44500NANA8+27850606..27856739retrotransposon protein, putative, unclassified
LOC_Os08g44510Os.27475.1.S1_at10/118+27858716..27866582gibberellin action negative regulator SPY, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0005840cellular_componentribosome
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29659.2.S1_s_at--477--3811Chr08:27840622..27840646 (25 bp)
CTCCGTTCTCTCTGAGAGACTCAGG
LOC_Os08g44480
OsAffx.29659.2.S1_s_at--138--6731Chr08:27840626..27840646 (21 bp)
GTTCTCTCTGAGAGACTCAGGATCA
LOC_Os08g44480
OsAffx.29659.2.S1_s_at--978--8891NONE
TGAGAGACTCAGGATCAACGGGTCC
NONE
OsAffx.29659.2.S1_s_at--851--991Chr08:27841478..27841500 (23 bp)
AGGATCAACGGGTCCCTGGCTCGTA
LOC_Os08g44480
OsAffx.29659.2.S1_s_at--175--9691Chr08:27841480..27841504 (25 bp)
TCAACGGGTCCCTGGCTCGTAGGGC
LOC_Os08g44480
OsAffx.29659.2.S1_s_at--1149--7771Chr08:27841486..27841510 (25 bp)
GGTCCCTGGCTCGTAGGGCCATCAA
LOC_Os08g44480
OsAffx.29659.2.S1_s_at--911--4191Chr08:27841489..27841513 (25 bp)
CCCTGGCTCGTAGGGCCATCAATGA
LOC_Os08g44480
OsAffx.29659.2.S1_s_at--473--7551Chr08:27841526..27841550 (25 bp)
GGGCCTAATCCGCATGGTCTCGGTT
LOC_Os08g44480
OsAffx.29659.2.S1_s_at--1138--9751Chr08:27841531..27841555 (25 bp)
TAATCCGCATGGTCTCGGTTCACTC
LOC_Os08g44480
OsAffx.29659.2.S1_s_at--778--551Chr08:27841533..27841557 (25 bp)
ATCCGCATGGTCTCGGTTCACTCAA
LOC_Os08g44480
OsAffx.29659.2.S1_s_at--329--3491Chr08:27841538..27841562 (25 bp)
CATGGTCTCGGTTCACTCAAGCCAG
LOC_Os08g44480
Target Sequence 
CTCCGTTCTCTCTGAGAGACTCAGGATCAACGGGTCCCTGGCTCGTAGGGCCATCAATGATTTAATGACACGGGGCCTAA
TCCGCATGGTCTCGGTTCACTCAAGCCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29659.2.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis