Browse Element(s) Details


OsAffx.29693.1.S1_x_at

Description tigr:9637.m00101
TID=OsAffx.29693.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g0257011/11hypothetical protein
LOC_Os09g025803/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g02510OsAffx.17536.1.S1_at11/119+1047804..1050501hypothetical protein
LOC_Os09g02510Os.51198.1.S1_at1/119+1047804..1050501hypothetical protein
LOC_Os09g02520OsAffx.29689.1.S1_at11/119+1051451..1051870hypothetical protein
LOC_Os09g02530Os.27750.1.A1_at11/119+1054332..1055393expressed protein
LOC_Os09g02530OsAffx.17537.1.S1_x_at10/119+1054332..1055393expressed protein
LOC_Os09g02540OsAffx.29690.1.S1_at11/119+1058839..1059630expressed protein
LOC_Os09g02550OsAffx.29691.1.S1_at11/119+1060676..1061128hypothetical protein
LOC_Os09g02560OsAffx.29692.2.S1_at11/119+1063176..1063888hypothetical protein
LOC_Os09g02560OsAffx.29692.2.S1_x_at11/119+1063176..1063888hypothetical protein
LOC_Os09g02570OsAffx.29693.1.S1_x_at11/119+1069950..1070345hypothetical protein
LOC_Os09g02580OsAffx.29693.1.S1_x_at3/119+1074066..1074317hypothetical protein
LOC_Os09g02580OsAffx.6499.1.S1_x_at1/119+1074066..1074317hypothetical protein
LOC_Os09g02589NANA9+1084396..1084533NA

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29693.1.S1_x_at--89--4111Chr09:1070221..1070245 (25 bp)
CGAAGAAGTTGGAGACGCCGGCGTC
LOC_Os09g02570
OsAffx.29693.1.S1_x_at--338--3271Chr09:1070150..1070174 (25 bp)
CAACTTGTTCTCTTGAGCGGGAGCA
LOC_Os09g02570
OsAffx.29693.1.S1_x_at--373--8631Chr09:1070112..1070136 (25 bp)
TGGTGGCTCCCATTCTGCCGTCTTT
LOC_Os09g02570
OsAffx.29693.1.S1_x_at--179--8491Chr09:1070109..1070133 (25 bp)
TGGCTCCCATTCTGCCGTCTTTGCA
LOC_Os09g02570
OsAffx.29693.1.S1_x_at--1001--9312Chr09:1070071..1070095 (25 bp)
TCGTAAACGCCCCACCGGTGACAGT
LOC_Os09g02570
OsAffx.29693.1.S1_x_at--846--1811Chr09:1070065..1070089 (25 bp)
ACGCCCCACCGGTGACAGTGCAGAT
LOC_Os09g02570
OsAffx.29693.1.S1_x_at--169--3371Chr09:1070059..1070083 (25 bp)
CACCGGTGACAGTGCAGATCCTGCC
LOC_Os09g02570
OsAffx.29693.1.S1_x_at--303--7771Chr09:1070055..1070079 (25 bp)
GGTGACAGTGCAGATCCTGCCCCAT
LOC_Os09g02570
OsAffx.29693.1.S1_x_at--116--9271Chr09:1070041..1070065 (25 bp)
TCCTGCCCCATCCTGCCGAGGATTA
LOC_Os09g02570
OsAffx.29693.1.S1_x_at--741--5332Chr09:1074113..1074137 (25 bp)
GAAGATGATTCCCAAGAGGTGCCTG
LOC_Os09g02580
OsAffx.29693.1.S1_x_at--294--7792Chr09:1069980..1070004 (25 bp)
GGTGCCTGGGATTCAGAGGAGGACA
LOC_Os09g02570
Target Sequence 
CGAAGAAGTTGGAGACGCCGGCGTCGGCTGTGGTAGGAGCCTTCACGGCGCGTGAGCTCTGCGCGGCCAAGCAACTTGTT
CTCTTGAGCGGGAGCAACAAGTCGTCCTCTGGTGGCTCCCATTCTGCCGTCTTTGCATCCTCGGGCTCCTTCGTAAACGC
CCCACCGGTGACAGTGCAGATCCTGCCCCATCCTGCCGAGGATTACCTCAGCGATGAGGAGCTAGAAGATGATTCCCAAG
AGGTGCCTGGGATTCAGAGGAGGACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29693.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis