Browse Element(s) Details


OsAffx.29696.1.S1_at

Description tigr:9637.m00129
TID=OsAffx.29696.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g0286011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g02820OsAffx.32083.4.S1_x_at11/119+1319490..1322198hypothetical protein
LOC_Os09g02820OsAffx.32083.1.S1_at4/119+1319490..1322198hypothetical protein
LOC_Os09g02820OsAffx.32083.3.S1_x_at3/119+1319490..1322198hypothetical protein
LOC_Os09g02820OsAffx.32083.1.S1_x_at2/119+1319490..1322198hypothetical protein
LOC_Os09g02820OsAffx.32083.2.S1_x_at1/119+1319490..1322198hypothetical protein
LOC_Os09g02830OsAffx.6153.1.S1_at1/119+1324181..1324807SRF-type transcription factor family protein
LOC_Os09g02840NANA9+1331084..1336147transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g02850OsAffx.17544.1.S1_at11/119+1336310..1337153hypothetical protein
LOC_Os09g02860OsAffx.29696.1.S1_at11/119+1340563..1341235hypothetical protein
LOC_Os09g02870Os.47463.1.S1_x_at6/119+1342927..1347922transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g02870Os.14491.2.S1_x_at4/119+1342927..1347922transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g02880OsAffx.29697.1.S1_at10/119+1351117..1352234hypothetical protein
LOC_Os09g02890OsAffx.17545.1.S1_at11/119+1353909..1355501AC transposase, putative
LOC_Os09g02900NANA9+1356426..1358374transposon protein, putative, Mutator sub-class
LOC_Os09g02910OsAffx.6157.2.S1_at10/119+1360120..1368902hypothetical protein
LOC_Os09g02910OsAffx.30422.1.S1_x_at4/119+1360120..1368902hypothetical protein
LOC_Os09g02910OsAffx.2296.1.S1_x_at1/119+1360120..1368902hypothetical protein
LOC_Os09g02910OsAffx.30422.2.S1_x_at1/119+1360120..1368902hypothetical protein
LOC_Os09g02910OsAffx.7706.1.S1_at1/119+1360120..1368902hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29696.1.S1_at--222--4491Chr09:1340617..1340641 (25 bp)
GCCGGCGCCACGCTTGGCGGCAATG
LOC_Os09g02860
OsAffx.29696.1.S1_at--123--5191Chr09:1340636..1340660 (25 bp)
GCAATGGCGGGCAAGCCTATGATGC
LOC_Os09g02860
OsAffx.29696.1.S1_at--420--4671Chr09:1340642..1340666 (25 bp)
GCGGGCAAGCCTATGATGCCGTTGC
LOC_Os09g02860
OsAffx.29696.1.S1_at--381--7611Chr09:1340644..1340668 (25 bp)
GGGCAAGCCTATGATGCCGTTGCTG
LOC_Os09g02860
OsAffx.29696.1.S1_at--302--3251Chr09:1340647..1340671 (25 bp)
CAAGCCTATGATGCCGTTGCTGTCA
LOC_Os09g02860
OsAffx.29696.1.S1_at--7--6691Chr09:1340662..1340686 (25 bp)
GTTGCTGTCATCCTCCGGCAGCCGT
LOC_Os09g02860
OsAffx.29696.1.S1_at--600--9271Chr09:1340675..1340699 (25 bp)
TCCGGCAGCCGTTGATGCGAGATGT
LOC_Os09g02860
OsAffx.29696.1.S1_at--804--1951Chr09:1340728..1340752 (25 bp)
ACTGGTGGCCGGGATGGCGTGCTAA
LOC_Os09g02860
OsAffx.29696.1.S1_at--178--871Chr09:1340741..1340765 (25 bp)
ATGGCGTGCTAATGGTGGCGACGGC
LOC_Os09g02860
OsAffx.29696.1.S1_at--734--8371Chr09:1340710..1341202 (25 bp)
GGCGACGGCGACATTACCACATCAC
LOC_Os09g02860
OsAffx.29696.1.S1_at--149--5751Chr09:1340713..1341205 (25 bp)
GACGGCGACATTACCACATCACAAT
LOC_Os09g02860
Target Sequence 
GCCGGCGCCACGCTTGGCGGCAATGGCGGGCAAGCCTATGATGCCGTTGCTGTCATCCTCCGGCAGCCGTTGATGCGAGA
TGTGGTGGGCGGCGGCGACGGCGTGGTGGGGACTGGTGGCCGGGATGGCGTGCTAATGGTGGCGACGGCGACATTACCAC
ATCACAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29696.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis